RNA id: CI01000003_00410927_00411601.mRNA


Basic Information

Item Value
RNA id CI01000003_00410927_00411601.mRNA
length 1940
RNA type mRNA
GC content 0.41
exon number 1
gene id CI01000003_00410927_00411601
representative True

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 410569 ~ 412508 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTCTACATCTTCTGTGCTATTCAAGTATAATTAAAACAGTATTGATCTGTGTTTATTTATTGTGCACAGTGTTTTAAGGCTTATTTCAGTAACTGACCTGGTCCCTTGGTGTGTGTCTCTCTCACATTTGAGCTCGACACTACAGTGCAGGGGAGATCTCCTGTTGATACGTTCAAACCCTAAAAAGGCTTTGAAGACAACTGGCCAATGAAGAGAGAGATTAATTTTAAACTCCCTCTGCCTGTGGGGAATTAGCTTCTTGTCTTCATGACAGACAGCCTGTCTGTTCATGAAACCAAACTAATAATTCAGACTTGCACTTTTATTAACTGATGTCAAGGTTTGGAAATGTATACTTAAATTCAAACTCATATGCAATTCAAGCCTTTATTAGATATCCGCTTGTTAAGTCGTGACGTAAGGAACGCCGTTTCTGGGTCCAAGCCTCGACTCGTTTCACGGCCGTTTATGAGCGCTATTTATTCATATGAACATTCATATAACATTTTAAAGTTAAACATTTAAAATACTTACAGTCTGCACAACAGTCTCCGTGCTTACAGACATTAATATTTTAACGATTTATAAAAGATGAATCACTGTCTGGCCATCTGGAATTTTGGTATGGAGATAAAGGTTATGATTATAATTTTTTGGAAGTATTACACAACATCGTGTGTGTATATTAGCACCATTTTGTTGTTTTCTTGTGGCATGAGCGTTTGGAACCGTCAGACTTAACATATATATATATATATATATATATATATATATTGTAGTTAGACTATTAGAGACTCTAATATTTAATTAAAATTGTACTTCCGTCGTGTACAGGAACGTCACTGCGAGACGTCATCATAGTGCCACAACTTCCTGTTTTCGTTCCATATACTTCTGAGTGAATAATGGCTGAATTAAACCGACAGCTTCAGGAATATTTGGCTCAGTCTAAAAGCGGCGCGAAGACGATATCACAGTCCAGTTCCAGCACAGCCATAGACATTGATGAACCTGCTTCGGTGCCAGAGAGCTGGTTCGGCAGGTGGTCGAGTCCATTCACTGGATCCAACAGCCGTGGAGCGTCATCAGGCCAAGGATCGAGCAGCGGCTTCTCGTGGCCGTGGTCTTCAGAACCTGATCCATGTTTGCCAGGCATGAGTCGATCCCAGCGACTGATCGCGTTCGGAACGTGTATTTTCTTCTCTGCTCTGTGTTTCGGACTGTCGGCACTTTATGCTCCTTTACTCCTGCTGAAGGCGCGTAAGTTCGCTCTGCTGTGGTCGCTCGGCTCCGTGTTCGCGCTCATCGGGGCGGCGATCCTCCGCGGACCAAGTAAACTCATCGCAACTCCCACACCGGGAGCCGCGGTGTATCTGTGCTCTCTGGTAGGCACTCTGTATGCGGCGTTGAGCCTTCACAGCACGCTGCTCACCGCTCTCGGAGCCTGCCTTCAGATTGCTGCTATTGTGGGTTACATCGTGGCTTTGTTGCCGGGTGGGAGTGCCGGGATGAGGTTTGTGGGTGGCATGGCAGCGTCCGCTATTAAAAGGACTATGACTGGTAAGACCATGCCTATATGACCAAGGAACTCACGGACTAGGCAACAGACAATATCTAACATGGATTTTTTTTGTTTGTTTTTTTTGTTTTGTGGAGTGACTGGTCTGGTACAGCCATATTTAATTGTGAAAATCTGGTTGTAGCCTATACAGAGGAATCCAGTGTGAGGCAGCATTCTGTGGATGGGGATATTTAGTAATATATATATATATATATATATATTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGAAATGATGACATTTTGTAATTTTCATCGTGACAAGGACCATATATATGACCAAAACATTATATTACTTGCCTTTTAACTTTCTGAACTGCTTTTGAAACTTAACTTTATAAATAAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25620 lncRNA downstream 2258 406420 ~ 408311 (-) True G22704
TU25686 lncRNA downstream 32677 377605 ~ 377892 (-) True G22767
TU25675 lncRNA downstream 72307 338052 ~ 338262 (-) True G22756
TU25663 lncRNA downstream 93252 317115 ~ 317317 (-) True G22745
TU25661 lncRNA downstream 97864 312497 ~ 312705 (-) True G22743
TU25707 lncRNA upstream 26614 439122 ~ 440180 (-) True G22781
TU25625 lncRNA upstream 38015 450523 ~ 451116 (-) True G22709
TU25727 lncRNA upstream 118298 530806 ~ 531021 (-) True G22798
TU25737 lncRNA upstream 150700 563208 ~ 563430 (-) True G22807
TU25740 lncRNA upstream 155490 567998 ~ 568221 (-) True G22810
CI01000003_00388122_00389931.mRNA mRNA downstream 20542 388122 ~ 390027 (-) True CI01000003_00388122_00389931
CI01000003_00364162_00366637.mRNA mRNA downstream 43932 364081 ~ 366637 (-) True CI01000003_00364162_00366637
CI01000003_00301515_00302754.mRNA mRNA downstream 107667 301515 ~ 302902 (-) True CI01000003_00301515_00302754
CI01000003_00228735_00265553.mRNA mRNA downstream 145016 228668 ~ 265553 (-) True CI01000003_00228735_00265553
CI01000003_00196906_00197323.mRNA mRNA downstream 213246 196745 ~ 197323 (-) True CI01000003_00196906_00197323
CI01000003_00418856_00424844.mRNA mRNA upstream 5969 418477 ~ 425969 (-) True CI01000003_00418856_00424844
CI01000003_00458786_00461307.mRNA mRNA upstream 45960 458468 ~ 461307 (-) True CI01000003_00458786_00461307
CI01000003_00473640_00508021.mRNA mRNA upstream 61068 473576 ~ 508021 (-) True CI01000003_00473640_00508021
CI01000003_00640353_00641395.mRNA mRNA upstream 227434 639942 ~ 643476 (-) False CI01000003_00640353_00641395
CI01000003_00719773_00720087.mRNA mRNA upstream 307075 719583 ~ 720332 (-) True CI01000003_00719773_00720087
TU25632 other downstream 340825 50512 ~ 69744 (-) True G22716

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030478 True 1637 mRNA 0.46 1 NC_007113.7 5406236 ~ 5407872 (+)