Gene
RNA
| Item | Value |
|---|---|
| gene id | G22767 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000003 |
| NCBI id | null |
| chromosome length | 2831192 |
| location | 377605 ~ 377892 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU25686 | True | 288 | lncRNA | 0.35 | 1 | 377605 | 377892 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000003_00364162_00366637 | NA | coding | downstream | 10968 | 364081 ~ 366637 (-) |
| CI01000003_00301515_00302754 | NA | coding | downstream | 74703 | 301515 ~ 302902 (-) |
| CI01000003_00228735_00265553 | MB21D2 | coding | downstream | 112052 | 228668 ~ 265553 (-) |
| CI01000003_00196906_00197323 | NA | coding | downstream | 180282 | 196745 ~ 197323 (-) |
| CI01000003_00076297_00077678 | NA | coding | downstream | 299805 | 76270 ~ 77800 (-) |
| CI01000003_00388122_00389931 | DUSP28 | coding | upstream | 10230 | 388122 ~ 390027 (-) |
| CI01000003_00410927_00411601 | SFT2D3 | coding | upstream | 32677 | 410569 ~ 412508 (-) |
| CI01000003_00418856_00424844 | NA | coding | upstream | 40585 | 418477 ~ 425969 (-) |
| CI01000003_00458786_00461307 | NA | coding | upstream | 80576 | 458468 ~ 461307 (-) |
| CI01000003_00473640_00508021 | PEX5LB | coding | upstream | 95684 | 473576 ~ 508021 (-) |
| G22756 | NA | non-coding | downstream | 39343 | 338052 ~ 338262 (-) |
| G22745 | NA | non-coding | downstream | 60288 | 317115 ~ 317317 (-) |
| G22743 | NA | non-coding | downstream | 64900 | 312497 ~ 312705 (-) |
| G22737 | NA | non-coding | downstream | 81441 | 295955 ~ 296164 (-) |
| G22734 | NA | non-coding | downstream | 84396 | 293004 ~ 293209 (-) |
| G22704 | NA | non-coding | upstream | 28528 | 406420 ~ 408311 (-) |
| G22781 | NA | non-coding | upstream | 61230 | 439122 ~ 440180 (-) |
| G22709 | NA | non-coding | upstream | 72631 | 450523 ~ 451116 (-) |
| G22798 | NA | non-coding | upstream | 152914 | 530806 ~ 531021 (-) |
| G22807 | NA | non-coding | upstream | 185316 | 563208 ~ 563430 (-) |
| G22716 | NA | other | downstream | 307861 | 50512 ~ 69744 (-) |
