CI01000003_00640353_00641395


Basic Information

Item Value
gene id CI01000003_00640353_00641395
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 639942 ~ 644060 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_00640353_00641395.mRNA
AATGGATCCTGCAGAAACAGAGAGCAAAAGAGAAAGGAAGCCTACCAAAGCCATCATAACCTCCCATGTTAAGAAACTAAAAATAGAAGCTGTATATTCAGCCAGCTTGTTCTGGAACAAAGGACGATTGACTAAGAAATTAGTATTTACACAAGCAGCAGTCCAACAGCCAGCATAGGCTCCCTCATACATCACTGTCACAGTGCCGTTTTCCCCTCTAGTTTAATCAGATAAATTCTTTAAGTTGTTCTAAACAGTCATTGCTTACAGATGACTTAAAAACATCCTTTCCATGTTTGAACCAACAGAATATTTACAAGTACTTAAATTCTCCAAGTGGGAATGTAAAATTTTCCTTCATCCAAAAAAAGTGTAAGAACTTCTGATTGTCTGTAGAAAGGACTAATCATATATGCTGACATGTTATATTAATCTCATATGTATGTTTTCTAAATGTAATTTTTATATTACATTTAGAAATTTCAGGAATGGCTGAGATTGAAACAATTTTGGCATGGTCAGTTTAATTATGGAGAGGTTCTTATAATAAAAGTTTAAAATAATCTTGTAGTATGTTGAGGTTTGCACCTCAAGAATTGTTTAACAATTGACAAAGGAATTCCAACTGAATGTCAATCACGAGCAGAGCAGATGGAACATAATCCTATGGGCTGTGCATCAAGGATTTGAGAAGTTAATGCCATGGTTCGAGGTGGCATGAGACACCATACGGCACCATACACAGGCAGTAATCATGCCAGAGGCCAAAGGGTTCTAGTTAAACACTGCCTAGCCAATGACTTCTAACAGTTTACTGAGTGATAACATCAGCATTTAAAATAACTGTTTCTTAACAATCAAAAATTGATGCACCTTCTTGATGGAAATAAATGTTCTGATGTTATTTCCATCAAGAGGTGCATCAATTTTTGATTGGTCAAGATCTTGTATTGACGCAAGAGTCGAGAGCTCTGTACTCCAGCACATCCCCAAAGACTTTCAATGAATTTAAGGTCTGGACTCAGAAGTGTAGTTACCAACAAATTTCACAATCACGCTGTACTGAATAATTCAGTACAGCGTGAGGTACTTGTAAGAGGTACTTGTGCTCTGGTAATGCTAGAGCTAACGCATTACTGTGACGCTCTCATTAAGCACAAGCAGGCTTTACCCTGAGCTAATACAATGAAATGTGTGCAAAATCTCCATCGGTGTAGAGAGAGTGATTACTGGAGAGCAGAGTGTTAACTCCAGTCAGAGCAGAGATAAGCCAATGACTGATTAAAAGAGAAAAGCTGTGAATAGAGGAAAGACACCCCTGACTTATGCACTGACAGTCTTCATACCAGCAGTCAAGCACTTCTAAACATGCTAGTAGTTAACATAAAATACATTCCGAAAGTCATTTTGTGTTACATGGTACATCTAAAACTATTTTAAATAAAATTTGATCATAGTTTTATTTGTTTATTTTTTCATTCTTATGCATGCTCATGTTAATATAAACTAGTGAAGACAAAAAGGTATATACATGTATGTTGGCTCACAGGGACCCAGGTCCGACTTTGGTCATGCCCTGATCCCACTTCTCCTACCTACACTTCTATATTACTATCCTACTTCTAACACATTACTAATATATTTATAGGATATAAATAAATAAAAAAATAAAAACAATTAAATAAATAATAATAATAATAATAACCAAAATAAAATCTAAAAGAGAGAACCTAATGTTTGTACATTCCCTGTTCATATAAATTTCTACCTAAATCTTGGGAAAGAAAGAAGTCCGTGGACATGTTTCGTGCCAGCTCCCCATGGGAATATCTCTACTTTGGTGTATGCTGGATCTTTAAGGCAACTCTTATCTCACCAAGTTGACTGTATGTGCCTTAGAGTTCAGACTTCCTCTCCTTTGATCTTTCTGGCAGCTGTACAGAAGAAAATTTTGGCAGCAACACTTGGCTACACCTGGATGCACATGCTGGACAGATTCTCACAGTCTGTCCTCTATCTCTGACATAAAGCAAACCTGAGAAACAGAGCAGAGAGCTCCGCCACCCACCTTGCATCCAAACATGAGCGAAATGGTGCTATTCGTACAGGCCACTTTGCAGTGGCACAGCATGGGCGAGAAACAGTCCAACTTCTTGATGCTGGTCTTTCTTCTTCTGCTTCACTTGCTTGCAATGAAGAATCCGTCTCTCCACCTTCCTACCGGTCTTCCACGGTCCTTCCTTCTCCTTTTGGCCAACGACCTCACGGCTGTCAGTCACAGAGTAGATGTTTACACAGAGGCCTCGCCGGAGCCATGCCGTGTGCGAGAGAGTGCGTTCATGCGTGAAGTACAGCTTTCGGCTCTTCTGGTTAAATCTTCTCCATCACACAAGACACCAGACAACTACCTCTTTCCCAAAAGAAAGCGTGGGTGCTCTACGTCACCCGATACATTGAGGGGAAGGAAAAAAGCTAAAGCGGTTATCAGTGAGATAGAGGAACAGCAAATGAACATCCTCAGGGAGCACAGCCTCGCATGGAGGAGGAGGAGCAATAATGGAGTGACTTCCTGCACGTTTACACGGAGGAGAGAAAAGGGGCAGGGGGAGGGGGAGCTCGGAGCCTGGCCAATAAGACGACAGAATGTCATTGGCAGCTGACTGGACAGTCTGGCTGTGACCTTCTGAGAATGGTGCCATTTCTTGAAGGAATCCATACGAAGCAGAAAGTGGTCCATGACAGGGTCATACAGAGAACTTCTTATGCTTTACTCTAGTCTGTTTTTCCATTGTATAAGGTTTGATTATGATGTCCGTGGAACGGTCACACAGGACAAACCCCTCGGGTCATTGGCCAAAAAGGGGCAGTAATGTGGGGGAGGGTCTGCAATGACAAAGATCAGGCTTTGACTTTGCTTCAGGAACATTTTAAATCAGCAGTCAAGCTAAGAGGGATGTAGCAAAATACTGCCATACACACTAATCTAATCCTTACAGCTAATGAGATCATGTTCGTAAGCAACGTGCGCATACATGTGCAATAATCTGTCAGGGCAGAAATCCTAGAATAAA
>TU25802
CGCATAAACCAGCAAGATAAGTGCTGTCCTACTGTTATTAAAGGGTGACCGAATGGTAATGCTTTAAAGCGATGCTTTACATTGCCTGTAACTAAATCCGCACACAAGCCATCGGCTCCAGTCCTAAAGGACAATCATTGGAAACGGTTCTAACAACAAAATCTGGGGTGACATGACATGGCATTTGGGCAATTATCTCATCTGTGAGATCAGATGCTAAAATTGTGCTGTCAATCTGGCAATCTAGTGAGCAGCATGAGCTCCTCCACTACTCTTTCATATGCTGCCCTTCCTATCATCAAGAAAATGACATTTAAGTGCAAGAGAAACGGCTAGTTTGGATCATTCTAGTTCAATCTGAGATGTGCTGAATGTGCCAGCCTGTATCAAGCAAGGCTTTTTAAAGGCAAAGATTGCAAGGAGAATTTTGTGAGCAGTAGACCGAAGAAACTGGACTCTACAGCACACAGAGATGGAGCTGGTGAAAAGTGTACGTGTACCTCTGGGTTAACTGTGTTAACGTGATGAGGTGTTGCGCTGCTGACAAATCGGAATATATAACCCGACTTGTCATTATTAAAATCAATGGATCCTGCAGAAACAGAGAGCAAAAGAGAAAGGAAGCCTACCAAAGCCATCATAACCTCCCATGTTAAGAAACTAAAAATAGAAGCTGTATATTCAGCCAGCTTGTTCTGGAACAAAGGACGATTGACTAAGAAATTAGTATTTACACAAGCAGCAGTCCAACAGCCAGCATAGGCTCCCTCATACATCACTGTCACAGTGCCGTTTTCCCCTCTAGTTTAATCAGATAAATTCTTTAAGTTGTTCTAAACAGTCATTGCTTACAGATGACTTAAAAACATCCTTTCCATGTTTGAACCAACAGAATATTTACAAGTACTTAAATTCTCCAAGTGGGAATGTAAAATTTTCCTTCATCCAAAAAAAGTGTAAGAACTTCTGATTGTCTGTAGAAAGGACTAATCATATATGCTGACATGTTATATTAATCTCATATGTATGTTTTCTAAATGTAATTTTTATATTACATTTAGAAATTTCAGGAATGGCTGAGATTGAAACAATTTTGGCATGGTCAGTTTAATTATGGAGAGGTTCTTATAATAAAAGTTTAAAATAATCTTGTAGTATGTTGAGGTTTGCACCTCAAGAATTGTTTAACAATTGACAAAGGAATTCCAACTGAATGTCAATCACGAGCAGAGCAGATGGAACATAATCCTATGGGCTGTGCATCAAGGATTTGAGAAGTTAATGCCATGGTTCGAGGTGGCATGAGACACCATACGGCACCATACACAGGCAGTAATCATGCCAGAGGCCAAAGGGTTCTAGTTAAACACTGCCTAGCCAATGACTTCTAACAGTTTACTGAGTGATAACATCAGCATTTAAAATAACTGTTTCTTAACAATCAAAAATTGATGCAAGAGTCGAGAGCTCTGTACTCCAGCACATCCCCAAAGACTTTCAATGAATTTAAGGTCTGGACTCAGAAGTGTAGTTACCAACAAATTTCACAATCACGCTGTACTGAATAATTCAGTACAGCGTGAGGTACTTGTAAGAGGTACTTGTGCTCTGGTAATGCTAGAGCTAACGCATTACTGTGACGCTCTCATTAAGCACAAGCAGGCTTTACCCTGAGCTAATACAATGAAATGTGTGCAAAATCTCCATCGGTGTAGAGAGAGTGATTACTGGAGAGCAGAGTGTTAACTCCAGTCAGAGCAGAGATAAGCCAATGACTGATTAAAAGAGAAAAGCTGTGAATAGAGGAAAGACACCCCTGACTTATGCACTGACAGTCTTCATACCAGCAGTCAAGCACTTCTAAACATGCTAGTAGTTAACATAAAATACATTCCGAAAGTCATTTTGTGTTACATGGTACATCTAAAACTATTTTAAATAAAATTTGATCATAGTTTTATTTGTTTATTTTTTCATTCTTATGCATGCTCATGTTAATATAAACTAGTGAAGACAAAAAGGTATATACATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_00640353_00641395.mRNA False 3071 mRNA 0.41 3 639942 643476
TU25802 True 2032 lncRNA 0.38 2 641943 644060

Neighbor

gene id symbol gene type direction distance location
CI01000003_00473640_00508021 PEX5LB coding downstream 131921 473576 ~ 508021 (-)
CI01000003_00458786_00461307 NA coding downstream 178635 458468 ~ 461307 (-)
CI01000003_00418856_00424844 NA coding downstream 213973 418477 ~ 425969 (-)
CI01000003_00410927_00411601 SFT2D3 coding downstream 227434 410569 ~ 412508 (-)
CI01000003_00388122_00389931 DUSP28 coding downstream 249915 388122 ~ 390027 (-)
CI01000003_00719773_00720087 NA coding upstream 76107 719583 ~ 720332 (-)
CI01000003_00806620_00830978 NA coding upstream 162875 806351 ~ 831623 (-)
CI01000003_01194276_01196374 BAMBIB coding upstream 549840 1193316 ~ 1197019 (-)
CI01000003_01200556_01220189 NA coding upstream 556576 1200052 ~ 1220189 (-)
CI01000003_01348419_01352984 RAB18B, RAB18, RAB18A coding upstream 703123 1346599 ~ 1352984 (-)
G22698 NA non-coding downstream 66014 570454 ~ 573928 (-)
G22810 NA non-coding downstream 71721 567998 ~ 568221 (-)
G22807 NA non-coding downstream 76512 563208 ~ 563430 (-)
G22798 NA non-coding downstream 108921 530806 ~ 531021 (-)
G22709 NA non-coding downstream 188826 450523 ~ 451116 (-)
G22823 NA non-coding upstream 13960 657436 ~ 732257 (-)
G22821 NA non-coding upstream 72969 716445 ~ 718092 (-)
G22822 NA non-coding upstream 98826 742302 ~ 744603 (-)
G22973 NA non-coding upstream 214951 858427 ~ 860858 (-)
G22983 NA non-coding upstream 239731 883207 ~ 883409 (-)
G22716 NA other downstream 570198 50512 ~ 69744 (-)

Expression


Co-expression Network