CI01000003_01194276_01196374 (BAMBIB)


Basic Information

Item Value
gene id CI01000003_01194276_01196374
gene name BAMBIB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1193316 ~ 1197019 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_01194276_01196374.mRNA
ATTTAAATATCCTAATATACTACTGTAATTCATGAATGAAACTTGTGTAGGATATATCAATTTAAAAGGTGAAAAAGGTGAGGAGAAAATATTTAAACATTGGCTATTTTTTACACACAAGCGTCACTAAGTTAAAATAAGTAAAGTCATGCTTTCCCTGCAAAACATGAGGGTTAAGCTGTATTAGCCGTGCATGGGCACATGGGGAGGCAACAGTCACAACTCACTCGTGTGAATGAAACAGCCCAGCGGCTCGATGACTCTTAATAGGAGGAGCTGCTCGCTCATTCTCAAGCCTTCAACATTTAAGAGCACTCAAGCGGAGTATATACACAGTAGATTGTCTATGTGAATAGTCAAGTCTGAGAATTTCGCATACGAATTTAAACACAAATGGATTATAACATGGGTTTTTAATTTTAATCAAACGACTGCGCGTCGGCTTTTCTGCACACAAATGATTTTTATCTGGAAGTCCTGAAGAGAGCAGCGAGGACAGAACCACGATGTGATCATTTCTATTAAAAAAATGCTACGAAAAGTTTTGAAAGAAGCGAGTTGGAACACATTTTGGACATGAATACAGCATTTTGGGCTATAAAGTCTGTATCTATGCGAATCTGAAAGGCAAAGTGTTTTTGTCCAATGCGGCGGAACAGCAGTCTCGTTTCCATTTGGCTTCAGCTCGAGCTGTGCGCGATGGCTGTTCTCCTCACTAAGGGAGAAATACGGTGTTACTGCGATGCTCCCCACTGCGTGGCCACCGGTTACATGTGCAAATCAGAGCTGAATGCCTGCTTCACCCGCACCTTAGACCCACAAAGCACCAAGTCTCTTTTATCTCACGGGTGTTACGACCCTCTGCTGAACTCTGGAAAAACTTGCCATCCAGAGTCAACCTATGATACTGTTATTGGATCTTCCACTCTTCAGTGTTGCCACGAGGATATGTGCAACTACAGAGGCCTGCAAGATCTCATATACAGAGGAGGTGAAATTCATGACAAACACCGACATCAAACTGAAGGCAGTCGTCACGTGATTGCACGTCTACAGGAAATCCCTTCCTCCAAGGAGGTATGGTTCCGTGCGGCAGTCATCACCGTTCCCATCGCTGGTGGCCTCATCTTGGTCCTCCTCATCATGTTGGCCTTGCGTATGCTCCGCAGCGAAAACCGCAAAATGCGACAACAGAGGCGAGAAATGCTGTCTCGCCTTCATTACAGCTTTCACGGCCAACACCTCACCAAGGGTCATGTGGCCAAACTGGACTTAGAGTGTATGGTTCCAGTAGGAGGCCATGAGAACTGCTGCTTGACCTGTGACAAGATTCGACAGTCCGATCTTAGCAGCCAGCGACTTCTGTCATTGGTCAACTGGGGAAAGTACAGCGGCCGAGGCAAACTGGATTTTGTGTGATGGCTTTAGAATTTATTTTCCTTCGTGGGACTTTTTTGACTAAAACTTGTTTTATTTCAACACTTCTAACGGAGGAGCAGCAAACAAGAACTCAAAAGAGAACACTTGAAAGCGCTAACCATTTTGGTTGTTGCTCTAGAAGCACTTTACTTGAATTAGAGACTTGAGGAGAAGACTGCTTGTATATAAGCTGCGATGAGGAGCGGCTTTGTGCTGGTATTCTTTATAACCGAAGGATTCCAAGAAATATATTTGGTTTTAACGTTTGCACTTTTTGTATAAAGAAACTATGGTTGATTTGCTTTAATAGTGGTGTAGGACTAGTGTGTCAACATTCTCATAAAAATGTGTGCAAAAATTAAATGGTACAACAGCTTGTCACTGGGGCAATACCCTTAAAAGGTCATCTTGGTACCTTATTTACCCCTAAAAGGTTCATAGTAGTACCTTTAGGGTACATATCACTACTCTTAATATGCAGTCAGGGGTGGATAAGGTACAAAGTTGTCCCTTTAAGCGTACTTCCCCAGTGACAAGCTGTTGTACCCCTAAAAGTAACGTTTTTGCACAGTTTTTTCTGACAGTGAAGAATGACTGCTGGTGTGAATGTGTGACTTTTCACTGTTAAAGTTATAGTTCACCCAAAAATTGAATTTCTGTCATAATTTACTCCCCCCTCATGGTGTCCCAAACTCAACCTTTTATGAGCTGTTTCAGTCCGTAAAGTGGAAGTAGATGGAGTCCAAAACTTTGAAGCTCCAATAAGGACATAAAGGAAGCGTAAACATAATCTATTCAACTCTAGTGGTTTAATTCAATTCCTCTGAAGCAATATGATCACTTTGTATGATGAACAAGCAAAATTTTATAAAGTATTCTTTCACAAATCAAATCAAATCATTGATAAACTCATATATACAAAGCCTGAATCAAATATGCTGATACATCAATACCATTAAA

Function

symbol description
bambib Predicted to enable frizzled binding activity. Predicted to be involved in transforming growth factor beta receptor signaling pathway. Predicted to act upstream of or within negative regulation of transforming growth factor beta receptor signaling pathway and positive regulation of canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including ectoderm; epidermis; optic vesicle; pectoral fin; and pectoral fin bud. Human ortholog(s) of this gene implicated in colorectal cancer. Orthologous to human BAMBI (BMP and activin membrane bound inhibitor).

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process

KEGG:

id description
K10162 BAMBI; BMP and activin membrane-bound inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_01194276_01196374.mRNA True 2379 mRNA 0.41 3 1193316 1197019

Neighbor

gene id symbol gene type direction distance location
CI01000003_00806620_00830978 NA coding downstream 361693 806351 ~ 831623 (-)
CI01000003_00719773_00720087 NA coding downstream 472984 719583 ~ 720332 (-)
CI01000003_00640353_00641395 NA coding downstream 549840 639942 ~ 644060 (-)
CI01000003_00473640_00508021 PEX5LB coding downstream 685295 473576 ~ 508021 (-)
CI01000003_00458786_00461307 NA coding downstream 732009 458468 ~ 461307 (-)
CI01000003_01200556_01220189 NA coding upstream 3033 1200052 ~ 1220189 (-)
CI01000003_01348419_01352984 RAB18B, RAB18, RAB18A coding upstream 149580 1346599 ~ 1352984 (-)
CI01000003_01368353_01374263 YME1L1B, YME1L1 coding upstream 171334 1368353 ~ 1374263 (-)
CI01000003_01424386_01424816 NA coding upstream 227331 1424350 ~ 1424915 (-)
CI01000003_01601113_01624224 NA coding upstream 403946 1600965 ~ 1624224 (-)
G23393 NA non-coding downstream 116010 1076919 ~ 1077306 (-)
G23392 NA non-coding downstream 120764 1072330 ~ 1072552 (-)
G23391 NA non-coding downstream 121396 1071541 ~ 1071920 (-)
G23008 NA non-coding downstream 213858 979162 ~ 979458 (-)
G22996 NA non-coding downstream 243238 945030 ~ 950078 (-)
G23458 NA non-coding upstream 114563 1311582 ~ 1312065 (-)
G23463 NA non-coding upstream 130499 1327518 ~ 1327962 (-)
G23485 NA non-coding upstream 198430 1395449 ~ 1396836 (-)
G23481 NA non-coding upstream 219790 1416809 ~ 1421558 (-)
G23482 NA non-coding upstream 248212 1445231 ~ 1449391 (-)
G22716 NA other downstream 1123572 50512 ~ 69744 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015165 bambib coding NC_007113.7 CM002886.2 4402765 ~ 4408818 (+)