CI01000003_01348419_01352984 (RAB18B, RAB18, RAB18A)


Basic Information

Item Value
gene id CI01000003_01348419_01352984
gene name RAB18B, RAB18, RAB18A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1346599 ~ 1352984 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_01348419_01352984.mRNA
ATGGACGACGACGTGTTAACGACTCTAAAGATTTTAATTATCGGAGAGAGTGGTGTCGGTAAATCAAGTTTGCTCCTGCGTTTCACAGATGACACCTTCGACCCAGAATTAGCTGCAACCATCGGTGTGGACTTCAAAGTGAAAACTATCGCTATAGATGGCAACAGAGCAAAGCTGGCCATATGGGACACGGCGGGTCAGGAGAGGTTCAGAACTCTAACACCAAGCTATTACAGAGGAGCCCAGGGTGTCATTTTGGTGTATGATGTTACAAGAAGGGACACGTTCACAAAGCTTGAGAACTGGCTCAACGAGCTGGAGACATATTGCACACGCAATGACCTGGTTAAAATGCTAGTGGGGAACAAAATTGACAAGGACAACCGTGAAGTAGACCGGAACGAAGGCTTGAAGTTTGCACGGAAACACTCTATGCTTTTTATCGAGGCTAGCGCAAAGACGAGGGACGGAGTTCAGTGTGCCTTTGAAGAACTAGTGGAGAAGATCTTGCAGACGCCTGGTCTCTGGGAGAGCAGCCTCCAGAACCACGGTGTCCTGCTGACCGATCACGAACAGCAGCGTCCGGGTGCCTGTGGAGGCTACTGCTCTCTGGTTTAACATCCTCACCTCAACCCAGAACCACAAACTGAGATGGAATGCACCGTTTTCTTTCTTCTGAATGAGAGCTTCCTCTGAGGGGGAACGGTCTGCTCCCTTAGGGCTGGTCAAAGGGACCTTTGCAGTTTGCACACTCTCTGTCACACAGTTGTTGTTGAGTCCCAGTATTCTGTCATGTTATTTTCAATTAATGTATCACAGAGCTACATTAACTATAGCCTATGTAAACCTTTTATGTAAAATGAGTCCTGTTGAAGGTTAACAGCCTGAGCATGTTGAATTAGGCCAGGACAGAGCCAGAGCTGACATGCTTCCCCCTCAATGGGAGCACCACCTTTGACCTGATGTGTGTAGGCCAATAGGATTACTGGAGGGGAGGGGCCGAGAAACGGCAGGATCTGATGATCAGTGTGGTGAACTCATTCAACATTATAGTCATCAAATGTCCTTTGTACCTGTACTACATTTCATGTGCTTAACATATTCTCTGCTGCTGTTTAAATTCATATTCTTTATCCCATGTTATTATTTTTTAAATAATATTTGGCCTTAGAAATATTGCTTAACATGATTCTACCTTTTTAAAAAGTTGGAAATATTCTTTTGTAAATAATACCTCTTTAGTAGCTGTTCTGAAGCGTATCTCACACAATTGTCTATGAAATGCTGTTTAGCTGCAGCTCTCATGAGTTGAGATACGTTAAGCATGTTTAAATAATGTAATCTATGATGACTTGAGTCTGAATAACACATGGGATGATCCATTTTACTTCAATGTGTTTTAATCTTTGTCTCTTTTTTTTCTCTCTTTTCTAGTTTTCTTTCTTTTCTAGTTTATGTGAATGGATACCAAAAAGAACTGTGTTCATGGTTGTTTTTAAATTACAAAGCCTTCCTGTGACTTGTTCTTGATTCTATTCACATATTGACTTGACATGAGGAAGATTTTGTTATGCCTTAATATTTATTCAATCTGCATGTTTAACATGATCTCCACTACTGGCTTTCACTATGATTCTGTAGAGAGAGTGTTATTGTAGCCAGTCAAAATGGCCAGTGGTACATGGTTAAATTCATTTATTCATGGTCATTTAATTTAATTATAAATGTATCTTGGTCAAAACGTTTAATATGTTTGACTTTCATTTCACCTCTAATAGAGGTGTACGTTCTGCTGCCCGAGAGATTTATTCATTCGTGGTAAGAATTGCTTATGATATCCTGTAGCCAGAAAACCAAACACTGACCAGACCCCTAATTAGGATCTCTTACAATTCATGGGTATTAAATTCACATACAACAGTTCTGTGTTCATAAATTCTTTATACTTAATTTTGTAGGATTTTTTTTCTAGTCTGTATGTCATTTTCCGTTATGTAGTGGAAATTAGAATTATGTCTTACAAGCTTTTTTTCATTAAAATATCTAACTTGTAGAATTGTTTATACTTTGTTTTGCCACAGAATAGTGTCTTTTGTTGAAGCCTCTGTGAATGTGTTCAAAGTTATATCTTCATTATTAGCATGTAATTTCTAGTAAATGAACTCCAGATGAGCATATATGTCTGTGGCAATCACATAAAGGCAGGAAATTCATACCTACTGCAGCTCCATATTAGTTTAACAGGCCACATATGAAACATTTCTATACTGTGCACTACATACACAAACTCTGAAATATACAATGAACATGCTTGTCACAACAAATGTCAAAAGTTTGCACACTGATGTGTGGCAGTTCAGGTCACTCATTGGTATCATGGTCATCTTTCTCTCCTTTCATCAAACTGATTATACAGAGCTCTGCTTGTCAGAAATAAA

Function

symbol description
rab18a Predicted to enable GTPase activity. Acts upstream of or within chordate embryonic development and eye development. Predicted to be located in apical plasma membrane and lipid droplet. Predicted to be active in Golgi apparatus. Is expressed in brain; heart tube; optic cup; retina; and retinal inner nuclear layer. Human ortholog(s) of this gene implicated in Warburg micro syndrome 3. Orthologous to human RAB18 (RAB18, member RAS oncogene family).
rab18b Predicted to enable GTPase activity. Involved in brain development. Acts upstream of or within chordate embryonic development and eye development. Predicted to be located in lipid droplet. Predicted to be active in Golgi apparatus. Is expressed in brain; heart tube; optic cup; retina; and retinal inner nuclear layer. Human ortholog(s) of this gene implicated in Warburg micro syndrome 3. Orthologous to human RAB18 (RAB18, member RAS oncogene family).
rab18 Enables GDP binding activity. Involved in endoplasmic reticulum tubular network organization. Acts upstream of or within lipid droplet organization. Located in endoplasmic reticulum tubular network and lipid droplet. Implicated in Warburg micro syndrome 3.

GO:

id name namespace
GO:0019003 GDP binding molecular_function

KEGG:

id description
K07910 RAB18; Ras-related protein Rab-18

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_01348419_01352984.mRNA True 2438 mRNA 0.39 7 1346599 1352984

Neighbor

gene id symbol gene type direction distance location
CI01000003_01200556_01220189 NA coding downstream 126410 1200052 ~ 1220189 (-)
CI01000003_01194276_01196374 BAMBIB coding downstream 149580 1193316 ~ 1197019 (-)
CI01000003_00806620_00830978 NA coding downstream 514976 806351 ~ 831623 (-)
CI01000003_00719773_00720087 NA coding downstream 626267 719583 ~ 720332 (-)
CI01000003_00640353_00641395 NA coding downstream 703123 639942 ~ 644060 (-)
CI01000003_01368353_01374263 YME1L1B, YME1L1 coding upstream 15369 1368353 ~ 1374263 (-)
CI01000003_01424386_01424816 NA coding upstream 71366 1424350 ~ 1424915 (-)
CI01000003_01601113_01624224 NA coding upstream 247981 1600965 ~ 1624224 (-)
CI01000003_01632757_01671893 EGFRA coding upstream 277623 1630607 ~ 1671893 (-)
CI01000003_01807697_01809455 C1QL3, C1QL3B coding upstream 454146 1807130 ~ 1809455 (-)
G23463 NA non-coding downstream 18637 1327518 ~ 1327962 (-)
G23458 NA non-coding downstream 34534 1311582 ~ 1312065 (-)
G23393 NA non-coding downstream 269293 1076919 ~ 1077306 (-)
G23392 NA non-coding downstream 274047 1072330 ~ 1072552 (-)
G23391 NA non-coding downstream 274679 1071541 ~ 1071920 (-)
G23485 NA non-coding upstream 42465 1395449 ~ 1396836 (-)
G23481 NA non-coding upstream 63825 1416809 ~ 1421558 (-)
G23482 NA non-coding upstream 92247 1445231 ~ 1449391 (-)
G23479 NA non-coding upstream 97916 1450900 ~ 1452728 (-)
G23520 NA non-coding upstream 103650 1456634 ~ 1456846 (-)
G22716 NA other downstream 1276855 50512 ~ 69744 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016098 rab18b coding NC_007113.7 CM002886.2 4019538 ~ 4032732 (-)