CI01000003_01200556_01220189


Basic Information

Item Value
gene id CI01000003_01200556_01220189
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1200052 ~ 1220189 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_01200556_01220189.mRNA
GGCGCAGTCGCGAGCAAAACGAAGCGATGGACCGTCAGCTCTTTCCCGAATAGCGAAGCAGCACTGCAGCAGAGCTACTTTTACCGATATAACAGTGTGTGTTTGCAGACAGTAGCAGTAAAGAGAGCTGTAGTTCAACAGAACTGCTTCAGTAGTAACACTTCACTTCCACATCATTGCAGCATTAATGGTGTAATGATCGAAGAGATCCTCAATCCTACCAGCCTGTCAAATATCAGTCAAAGAGTCACTCTGCAAATGACCATCGCCATGACAAGATGCGAGACTCGTCAGACTCCACACCACCAACTAAAATGCTGCGGCGATCAGACAGTCCAGACAATAAGCAGAATGACGGAACAGGGCACAGTCAAACGAAAGCACTCCACGTTTACCGGCCTCGTGAGAGGGACAGCGCATCGTGAGCCAGCAGATGACTGGTCAGAGCATATCAGTTCATCTGGGAAGAAGTACTACTATAACTGCAGGACAGAAGTCTCTCAGTGGGAGAAACCTAAAGAATGGCTGGAAAGAGAACAAAGGCAGAGAGAAGGTGCCAAGACTGTGGTTAACAGCTTTCCCAAAGACCGAGACTACAGACAAGAGGCGATGCAGGCCAGTGCCACAAGTGCCCTCAGTAGTACAAAATCTTCTTTAGCGGAGAAGCCATTATCACACTCTGGTTATTCTCAGCCTTTGTCCATTAACCCCTCCAGTACGTCCAGCTCCTCCTCGTCCTCCACAGTGCCTGTGTCTCCTGCCCTGCAGGCTTCAGCCTCCACTCTGCTTCAGGACCCCGCACTCCTCCGACAGCTGCTGCCCGCGCTGCAGGCCACCCTGCAGATGAACCACAGCAATGTGGACATGGGCAAAATTAATGAAGTCCTCACAGCCGCTGTCACACAAGCTTCCTTACAGTCTATGCTTCATAAGCTTCTCACTGCCGGACCGTCCGCTTTCAACGTCACTACTCTGCTTTCCCAAGCTGCTCAGCTTTCCACACAAGCTCAACAGTCCGGACAGTCACCCATGTCATTAGCATCAGATGCTTCTTCACCGAGGTCATACGTGTCTCCTAGAGTCAGCACGCCTCAGACCAATGCTGTCTCTAAACCCCTGCTCAGTTGCGCATCTCTCTCTTCACAACCAAAGGTCAGTGCATCAATTCAGAGACAAGGATCAATGTCCCAGCAGTCAGTCAGCTCTGACAAACCTCTGGAATTCAGTGATCCCCGTCTTCACAGGCAAATTAGCCAAGAGGGCTTGTCGAGCTCTAATGGCAGTGCGGGCATCAGCATTCCCGCCTCAGGCAGCACCTCTCGAACCCAAAGCACTTTCACTCCTTCTCTAGCATTGCACTTTGATGAAAATCTCATCAAGCATGTTCAAGGCTGGCCTGCAGAACATGTAGAGAAGCAGGTGTCACGGTTGCGTGAGGATATCCACAATATGGGGACCCTCTACATGTCAGAGATCTGCACCGAGCTGAAGAACCTTCGCTCTTTAGTGCGAGTGTGTGAAATCCAGGCCACATTGAGAGAGCAGAGGATTCTGTTTCTGAGACAGCAGATCAAAGAACTTGACAAACTAAAGAATCAGAATTCCTTCATGGTTTGAGAGGGTGGCTATGGAGCTCATGGCAGTCTCTTTCCGAACAAGTCCAGCCCCTGGCTGTTTGGACCCCTGCTCTCAGCCCGAGCTCTCAGATCCGCAGTCAAACTACCGGCTGCAATGCCTGAAACGGGACAGAGAGATAGGAACCTTACAAAAGTGCTTAGGCAACACGAAGCCCTGAGATCATAGATTAATTTCACTGTCCTTTGACGTACATGGCTTCTCAATTCTCAGATCCACAGGCAATTAGAGAAGTGTTCAGAGAACACGCTCTCCAACCCAGACTAACCTGTGAGGAATCATGCAGTGGATCTGGCGATTCATGTGCTGGTTTTTCAAGGTTATGCCTGTGTTAATGGATCCTAAATTTCACTGTCACACTGGAGACTTAAAATCCCCCGTCCTCCACTGACTGACAGTGATTATGAATGATGTTAGAAGGGCTATCTGTGCACAAGGGCGCTTCCAGCTGTGCTGGCGTTTATCAAAGTGACCAATTAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_01200556_01220189.mRNA True 2121 mRNA 0.50 12 1200052 1220189

Neighbor

gene id symbol gene type direction distance location
CI01000003_01194276_01196374 BAMBIB coding downstream 3033 1193316 ~ 1197019 (-)
CI01000003_00806620_00830978 NA coding downstream 368429 806351 ~ 831623 (-)
CI01000003_00719773_00720087 NA coding downstream 479720 719583 ~ 720332 (-)
CI01000003_00640353_00641395 NA coding downstream 556576 639942 ~ 644060 (-)
CI01000003_00473640_00508021 PEX5LB coding downstream 692031 473576 ~ 508021 (-)
CI01000003_01348419_01352984 RAB18B, RAB18, RAB18A coding upstream 126410 1346599 ~ 1352984 (-)
CI01000003_01368353_01374263 YME1L1B, YME1L1 coding upstream 148164 1368353 ~ 1374263 (-)
CI01000003_01424386_01424816 NA coding upstream 204161 1424350 ~ 1424915 (-)
CI01000003_01601113_01624224 NA coding upstream 380776 1600965 ~ 1624224 (-)
CI01000003_01632757_01671893 EGFRA coding upstream 410418 1630607 ~ 1671893 (-)
G23393 NA non-coding downstream 122746 1076919 ~ 1077306 (-)
G23392 NA non-coding downstream 127500 1072330 ~ 1072552 (-)
G23391 NA non-coding downstream 128132 1071541 ~ 1071920 (-)
G23008 NA non-coding downstream 220594 979162 ~ 979458 (-)
G22996 NA non-coding downstream 249974 945030 ~ 950078 (-)
G23458 NA non-coding upstream 91393 1311582 ~ 1312065 (-)
G23463 NA non-coding upstream 107329 1327518 ~ 1327962 (-)
G23485 NA non-coding upstream 175260 1395449 ~ 1396836 (-)
G23481 NA non-coding upstream 196620 1416809 ~ 1421558 (-)
G23482 NA non-coding upstream 225042 1445231 ~ 1449391 (-)
G22716 NA other downstream 1130308 50512 ~ 69744 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015164 wacb coding NC_007113.7 CM002886.2 4383061 ~ 4388003 (+)