G22821


Basic Information

Item Value
gene id G22821
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 716445 ~ 718092 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU25752
GTTCGTTTTGATCAATGGAATGAATCAGATCAGTAGGTTATTTACATGTTTCTTTTTTTCCAGTCCCAAAATGTCCCTAAAAAGCAGAGGTGTTGAGGTGGTAGAACAAGCAGTCTTAGTATAGAAAACAATCATGTCGTAGGAAGAGCAGGCAGGACCCCCTCTCCAGGATGGGTTTAGAAAAAAAGGAGTCTCTGTGGAGCTTCCTGCTGACCAGTGTCAGCCCTGTGAAGCTCTTCTTCTAGCTGAGACGGTTTGTGTCTGAGAGGGGGGACGGACAGAGCGTTCTTCTCCACACATTATGACTCTGATGCAGCACACTTGGAGCAGATGATGTTGAAATGGTGGGCAGAGAGGAGGAAGAGACAGAACTAGCTTCAAATATTGTGTTAATCAGCTTGGCTCTGTTTTCTCTGCGCTCTCCCTGCTGTCCTGCGTTTGTTTCAGTTTGGGAAAATAAAGGGTGGTAACAGAAAAAGGAAAAATATATTCATACTATTTCTTTTGTTAAATCTCTTGCTCTAATATACATTTTACAATGTCAAGAAAATAACTCCCATCATAATAGTGCTTAAGTAAAGCTCAATATAGACTTTTATTATAACAAAATAGGCAGTTTATGGAGGGTTAAATATCTGTTAAGATCTCATTGTACAATAAATTTCTTCCACATATGCGGTGGCATTTTATTGCCTCTTAAAAATATCAGTTCCTTACAAATGGCAGACTTTCCTAAATGTAAATCAATGAGTTGAAAACATGTACTCTGTGTAAGACACTGATTGTAGACTCCGACATTCTAACGGTGGCGGCACACGTCTCACACCTGTGCAGCGGGACATCATCTAAACACAATGGCTCTGTAACGCAGACGATTAGAATGAGGAGAACAATAAGCATGCCAATACAACAGTCAAGAGAGAAAAAGAAGTAAATCAATGATGATGAATGTGCGGAACATACAGGACTACGGTGAAAATGAACAACGAGAAAGAAGGGCCGAAGAACACCTGGTCTTAAAAGCTACAACGTGCAAAGTTTTGCCTTTTTGTGTGTTTCTCACCATTTTAATGAATCCGATGCCTGAGACTCTAGCTCCGTGTCTCTCATTTACACAAAAACAACACAGAAAAAAACAGGTAAAACAAAAAGAGACTTGTGTTGGAAAATCCAGATCGCTGTCTTTGTCCTTACAAAGTAACCTCCCTTAAACATTAAGGAACTGTACCGTTTCCAAACCCCTGGTAAACAGATGCTGGTCTGGCATAGCTTTGCTTTCTGTAAGCGTGGAAGCAGTGGAGATCTGAGGAGAACAGATCATCTTCTCTTCAAATAGCTACTGAAGAGCTAAAAGTCAGGAGGTGAAGATGTAGGACTGAACAGAGATCGAAGTATGTTGGATTAAGGAATTAATCTGTTGAGTTAATGCTGTCAGTTGGAGAAGCCCAACTGAGATTATCGAAAAGAAAAACAAAAATGACAGAATCAATAAATAAATCAGGCAGAGAAAAGGGGACGATAAACTCCTGAAGGCTCTCATAGTTTCTCCTTGGACTGTACCCATATGTATGGCCCAGACTGTTCCTCGATGATTTGCTTGACTTGATCGTAGATCTCTTCCAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25752 True 1625 lncRNA 0.41 2 716445 718092

Neighbor

gene id symbol gene type direction distance location
CI01000003_00640353_00641395 NA coding downstream 72969 639942 ~ 644060 (-)
CI01000003_00473640_00508021 PEX5LB coding downstream 208424 473576 ~ 508021 (-)
CI01000003_00458786_00461307 NA coding downstream 255138 458468 ~ 461307 (-)
CI01000003_00418856_00424844 NA coding downstream 290476 418477 ~ 425969 (-)
CI01000003_00410927_00411601 SFT2D3 coding downstream 303937 410569 ~ 412508 (-)
CI01000003_00719773_00720087 NA coding upstream 1491 719583 ~ 720332 (-)
CI01000003_00806620_00830978 NA coding upstream 88259 806351 ~ 831623 (-)
CI01000003_01194276_01196374 BAMBIB coding upstream 475224 1193316 ~ 1197019 (-)
CI01000003_01200556_01220189 NA coding upstream 481960 1200052 ~ 1220189 (-)
CI01000003_01348419_01352984 RAB18B, RAB18, RAB18A coding upstream 628507 1346599 ~ 1352984 (-)
G22698 NA non-coding downstream 142517 570454 ~ 573928 (-)
G22810 NA non-coding downstream 148224 567998 ~ 568221 (-)
G22807 NA non-coding downstream 153015 563208 ~ 563430 (-)
G22798 NA non-coding downstream 185424 530806 ~ 531021 (-)
G22822 NA non-coding upstream 24210 742302 ~ 744603 (-)
G22973 NA non-coding upstream 140335 858427 ~ 860858 (-)
G22983 NA non-coding upstream 165115 883207 ~ 883409 (-)
G22984 NA non-coding upstream 173078 891170 ~ 891619 (-)
G22988 NA non-coding upstream 206717 924809 ~ 925081 (-)
G22716 NA other downstream 646701 50512 ~ 69744 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G322398 NA non-coding NC_047615.1 CM018561.1 18229395 ~ 18231463 (+)
bowfin (Amia calva) G56927 NA non-coding CM030126.1 CM030126.1 37636705 ~ 37734188 (-)
tiger barb (Puntius tetrazona) G48079 NA non-coding NC_056704.1 CM032073.1 25389444 ~ 25389982 (+)
mexican tetra (Astyanax mexicanus) G111236 NA non-coding NC_035909.1 CM008312.1 14953534 ~ 14954384 (-)