G22698


Basic Information

Item Value
gene id G22698
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 570454 ~ 573928 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU25608
TGCTTTTGAAACTTAAGAAAAAAAAAAGGTATAACTCACAAAATAAAAGTTAAGTTTATTGTTGAACAACAAACTCCACACATACAACAAACAGGCCAAGGTAAAACAAATAATGCAGACAAAACAAAGTCAAAAGAAACCAAAACTCCTTTTTTCTTTGGCCTAGCCCTCCCATACAAAAACTAGTTTATGGTACAACTAGTTATGGTACAACTAAAGTTCATACATAAAATTTACTGGAATGCTCTGAGTTCAATGGCTGTTGATTTTATACATGTTGTCTTAAATGTTGAAATATTGAGACATGGTCAAACAAGTAAAATTTCATAAAGAAGCACCGTTTTGGTCACAGGAGATCACGATAAAGTGGCTGACCTCTTCACAATATGTACAAAAATATAAAATGTAAATAAAAATACAAACAAATCCTTGTCTTGCTTATTTCATTGTGAATGCTGGAAATCGGAAGTTGTGGTCGGTCCTCTAGAAAATTTTGAATTGGGGGTCAGTTGGTTGACATGGGTGACGAACTTGAAAATGACCATGTTTTATGTATTTGAGTCCTTTATGCCACTGGCTCCAACAGTTGGGTTAAAGCAGAGGCGTCTACACCTGCTCAGCAATATGAAACGATCCTTTAATCATCATCATCCGTCTTCTGCTTCTTGGGGTCGACGTCATCCTGATAGAAAAGTGGGATTAAAAATTAATTACTTGAACTGTGACAAAAAGTGGAAACCACCACCACTCGGTTCCAGTATTCTTTAGGTAGCGATTCATGATTGTACCTCATCATCTTCATCGTCCTCTTCAGCAGCTCGTTTTGTTCCTCCACCTAGCTCGTCGTCATCTTCATCCTCGTCCTCATCCTCATCACCTGCAGAAAAGAACCATTAGCCACATGATTAAAACGTCTTTAAATTAGTTTGTCGCCATGTCAGAAAATTGTGAACATTAATGTTGCACCAACCCTCTCCTTCCTCTTCATCTTCCTCATCTACCTCATCATCTTCTTCATCATCAATTTCAGGCTCTCCGTTTTCTTCATTCTCCTGTTTACACATTTCAAAAAAGATCAGTGCATGTTCTCCATTAAATACCAAAGTAGTGGAATAGTAGAGAAGTCAAGAACACTGGCCAGGCAATTTAATTACCTTTCCATTAGTGGCATCTTTTCCATTTTCCTTCTCCTCAAGGAGCTTCTTCTCTTTCAGGTCCTTGCGGAGATTTCTGTCGCGGAGTCAACCTTCGTATCGGCCATAATTAATATTGTGTATCAATAAAATTCGGAACGAAGGAAAATGCGAAAATAATCCGCCTCTATCCTCCAATAATCACTATTGTAATGAAGCTTTCTTATGCCGACGGCATGTGATGAAGGAGGCTTTAATATAGATTTGCGGGCGGAGCATGAGAGGCGGTCGGCTGTATTTAATTGGTTAGTGGACTCCGAGGAGGTGTGTTTTCAAGGCAATAGAGTGGAACAATGGAAAGTATTT
>TU25611
TGCTTTTGAAACTTAAGAAAAAAAAAAGGTATAACTCACAAAATAAAAGTTAAGTTTATTGTTGAACAACAAACTCCACACATACAACAAACAGGCCAAGGTAAAACAAATAATGCAGACAAAACAAAGTCAAAAGAAACCAAAACTCCTTTTTTCTTTGGCCTAGCCCTCCCATACAAAAACTAGTTTATGGTACAACTAGTTATGGTACAACTAAAGTTCATACATAAAATTTACTGGAATGCTCTGAGTTCAATGGCTGTTGATTTTATACATGTTGTCTTAAATGTTGAAATATTGAGACATGGTCAAACAAGTAAAATTTCATAAAGAAGCACCGTTTTGGTCACAGGAGATCACGATAAAGTGGCTGACCTCTTCACAATATGTACAAAAATATAAAATGTAAATAAAAATACAAACAAATCCTTGTCTTGCTTATTTCATTGTGAATGCTGGAAATCGGAAGTTGTGGTCGGTCCTCTAGAAAATTTTGAATTGGGGGTCAGTTGGTTGACATGGGTGACGAACTTGAAAATGACCATGTTTTATGTATTTGAGTCCTTTATGCCACTGGCTCCAACAGTTGGGTTAAAGCAGAGGCGTCTACACCTGCTCAGCAATATGAAACGATCCTTTAATCATCATCATCCGTCTTCTGCTTCTTGGGGTCGACGTCATCCTGATCTTCATCGTCCTCTTCAGCAGCTCGTTTTGTTCCTCCACCTAGCTCGTCGTCATCTTCATCCTCGTCCTCATCCTCATCACCCTCTCCTTCCTCTTCATCTTCCTCATCTACCTCATCATCTTCTTCATCATCAATTTCAGGCTCTCCGTTTTCTTCATTCTCCTTTCCATTAGTGGCATCTTTTCCATTTTCCTTCTCCTCAAGGAGCTTCTTCTCTTTCAGGTCCTTTGCGGAGATTTCTGTCGCGGAGTCAACCTTCGTATCGGCCATAATTAATATTGTGTATCAATAAAATTCGGAACGAAGGAAAATGCGAAAATAATCCGCCTCTATCCTCCAATAATCACTATTGTAATGAAGCTTTCTTATGCCGACGGCATGTGATGAAGGAGGCTTTAATATAGATTTGCGG
>TU25612
TGCTTTTGAAACTTAAGAAAAAAAAAAGGTATAACTCACAAAATAAAAGTTAAGTTTATTGTTGAACAACAAACTCCACACATACAACAAACAGGCCAAGGTAAAACAAATAATGCAGACAAAACAAAGTCAAAAGAAACCAAAACTCCTTTTTTCTTTGGCCTAGCCCTCCCATACAAAAACTAGTTTATGGTACAACTAGTTATGGTACAACTAAAGTTCATACATAAAATTTACTGGAATGCTCTGAGTTCAATGGCTGTTGATTTTATACATGTTGTCTTAAATGTTGAAATATTGAGACATGGTCAAACAAGTAAAATTTCATAAAGAAGCACCGTTTTGGTCACAGGAGATCACGATAAAGTGGCTGACCTCTTCACAATATGTACAAAAATATAAAATGTAAATAAAAATACAAACAAATCCTTGTCTTGCTTATTTCATTGTGAATGCTGGAAATCGGAAGTTGTGGTCGGTCCTCTAGAAAATTTTGAATTGGGGGTCAGTTGGTTGACATGGGTGACGAACTTGAAAATGACCATGTTTTATGTATTTGAGTCCTTTATGCCACTGGCTCCAACAGTTGGGTTAAAGCAGAGGCGTCTACACCTGCTCAGCAATATGAAACGATCCTTTAATCATCATCATCCGTCTTCTGCTTCTTGGGGTCGACGTCATCCTCATCATCTTCATCGTCCTCTTCAGCAGCTCGTTTTGTTCCTCCACCTAGCTCGTCGTCATCTTCATCCTCGTCCTCATCCTCATCACCTGCAGAAAAGAACCATTAGCCACATGATTAAAACGTCTTTAAATTAGTTTGTCGCCATGTCAGAAAATTGTGAACATTAATGTTGCACCAACCCTCTCCTTCCTCTTCATCTTCCTCATCTACCTCATCATCTTCTTCATCATCAATTTCAGGCTCTCCGTTTTCTTCATTCTCCTGTTTACACATTTCAAAAAAGATCAGTGCATGTTCTCCATTAAATACCAAAGTAGTGGAATAGTAGAGAAGTCAAGAACACTGGCCAGGCAATTTAATTACCTTTCCATTAGTGGCATCTTTTCCATTTTCCTTCTCCTCAAGGAGCTTCTTCTCTTTCAGGTCCTACATAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAATTAAGTATTTCTCTTAACTGATATTTTAAAACATTTAACTTTGTCAGATTGGAGCCATTTGTGTCCAATAGGCAGAGTGAATGCAGATTACGATTGACGTGAACAAAACGCCCCCTATGCGCACAAATTTAAATTGCATCTCTAATGACGCCCCTCTGACATTGACGCCTCATTGGCTGCAGCAGAGAATTTTGCTGTCCATCAACGACCCCTGCTCCCGCCTCTTATCGAGCGAGCTCGTTTGTAATCTGACACTTTAGTGAGACTCGGCGGCTGTGGGCATTGTAAAATGTAAATCCATTAAGCAACAATATTTTGGCGTGTACGCACTTGCTTACATTGCAGCTCCAGAAAACACAAGCTTAAAACTCGAAACAAGCTGGATGATTCAGAACCACGGAATTGTGTTTCAGCGAGCTGATACCGAACTCTAATGAAAGACAAAGAAGCGCACGCATGGCTTTCACAATCTATCCATCCCGAACACAACAGAGTTCGGCATGCACGCCACCACCGCCGTCACGTTAACCTGGATTTAGTTCGCGCAGTCGCAGAATTGACAAGAAACCGTAGGCAAAAAAACACAACCTGTCAAAAAAATGTCAGAATATCATTGCTCCTTGAATTTGCTTTGACGGGTCTCGTTTCAATTAAAGCCTTGCCAAAAGCAGTTAAATGAGCCTTACACATGCAAATATTTTCATTAATTCGTTTATATAATCTTTAGCCCTTAAGCCGTTTATCAACCACATCAACTTGGACCGCCCCCTTAAATTCACGACGTCCCTGGCTTCAAACTAGTAAACCAACAAGCCCACGTTGTCGTCACACACGGAAAAATATAAACTCGTTGGAAATGCATAACATACAGCATTAGACCGATTATTCGATCTTTGGGCTTGCATATTAGCTGCCTCTGTGAGTTTAAAGGGCTTTCGAGTACGAGACAACGGCACCACCACCACAATTTACAGGCTTGAACGTCAAAACAGTTCGGGTCACACATAGCACAGTTTCTTCACTTGTTTATTATCAATAAACTTCAAAAAAAAAGAAAAGAAAAAAAATGGTTATTTGCCTTTGAAATCCGATGCACTGCAGCGTTAATCCAAGTTCCGCGTATTGGCTGCATCAGAACCATTCGTTATCGGACTTGATAAACCCGAACAGCGGTAATTCGAAATAACTTGCAATATGCTTCGTTAATCCCGTCAAATGTGCGACAAATTCGTTTTTTATTATATGTGAGATTCCCTATCGTTTAGCCGCCAAGACAAACCGGCAAACTTTCAGCCCCGAAGCCATCGACCGATCAACGCGTTCTCAAACCCGCCGTAATGCCTGTTAGCCACAAACTAACCGGTAATGAATGAACAGATTTAGGAATAAATAAGTGCTCAAAACATTGTTGTGCGGAAATTTACACAAGCCATAAAACCATAGGCTACCTACAAACAAAACATGAGTAAATTGTGTAACATATTAGGCTATTTATACATGTTTAAGATCTGGAAAACGAAATACAAAGAATTACAGGTTTAAGGATTTATCGTGGTAAGGCAGTTGACGTCCCCAGCTCACATCGCCGCTGTTCAAAGGGGAACCGACACGCTTGTATAAACAAAGAACCCGCGCGCGCAGACTGTTACATTCCGGACAATGAGAAATTGCGTTTGAATGTGCTCTCATTCCGAGCGCGCGATAGAACTCGTTACAATGTATCCATTTAAATTTCTCATTACAGTATCAATTTAAATCACTTACGGAACAGTTATCGCATACTTTTTCTTTATTCGTAATAAATTAATCAACGGTTCTTTCCGGCTACAGCCCAAAATAGCCTACGCGTTCGTGTTAAATCTTAACTAGGAGACAAATGAAAAGAGAAAATGCTTTTTAAATGAGAATTTCGTTTATCTAGAGGCACCCGTTCTTACCTTTGCGGAGATTTCTGTCGCGGAGTCAACCTTCGTATCGGCCATAATTAATATTGTGTATCAATAAAATTCGGAACGAAGGAAAATGCGAAAATAATCCGCCTCTATCCTCCAATAATCACTATTGTAATGAAGCTTTCTTATGCCGACGGCATGTGATGAAGGAGGCTTTAATATAGATTTGCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU25608 False 1499 lncRNA 0.39 2 570454 573928
TU25611 False 1100 lncRNA 0.39 5 570550 573928
TU25612 True 3273 lncRNA 0.36 2 570550 573928

Neighbor

gene id symbol gene type direction distance location
CI01000003_00473640_00508021 PEX5LB coding downstream 62433 473576 ~ 508021 (-)
CI01000003_00458786_00461307 NA coding downstream 109147 458468 ~ 461307 (-)
CI01000003_00418856_00424844 NA coding downstream 144485 418477 ~ 425969 (-)
CI01000003_00410927_00411601 SFT2D3 coding downstream 157946 410569 ~ 412508 (-)
CI01000003_00388122_00389931 DUSP28 coding downstream 180427 388122 ~ 390027 (-)
CI01000003_00640353_00641395 NA coding upstream 66014 639942 ~ 644060 (-)
CI01000003_00719773_00720087 NA coding upstream 145655 719583 ~ 720332 (-)
CI01000003_00806620_00830978 NA coding upstream 232423 806351 ~ 831623 (-)
CI01000003_01194276_01196374 BAMBIB coding upstream 619388 1193316 ~ 1197019 (-)
CI01000003_01200556_01220189 NA coding upstream 626124 1200052 ~ 1220189 (-)
G22810 NA non-coding downstream 2233 567998 ~ 568221 (-)
G22807 NA non-coding downstream 7024 563208 ~ 563430 (-)
G22798 NA non-coding downstream 39433 530806 ~ 531021 (-)
G22709 NA non-coding downstream 119338 450523 ~ 451116 (-)
G22781 NA non-coding downstream 130274 439122 ~ 440180 (-)
G22823 NA non-coding upstream 83508 657436 ~ 732257 (-)
G22821 NA non-coding upstream 142517 716445 ~ 718092 (-)
G22822 NA non-coding upstream 168374 742302 ~ 744603 (-)
G22973 NA non-coding upstream 284499 858427 ~ 860858 (-)
G22716 NA other downstream 500710 50512 ~ 69744 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G322405 NA non-coding NC_047615.1 CM018561.1 18338329 ~ 18343490 (+)
mexican tetra (Astyanax mexicanus) LOC103030796 NA non-coding NC_035913.1 CM008316.1 1956181 ~ 1969865 (-)