RNA id: TU25608


Basic Information

Item Value
RNA id TU25608
length 1499
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G22698
representative False

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 570454 ~ 573928 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCTTTTGAAACTTAAGAAAAAAAAAAGGTATAACTCACAAAATAAAAGTTAAGTTTATTGTTGAACAACAAACTCCACACATACAACAAACAGGCCAAGGTAAAACAAATAATGCAGACAAAACAAAGTCAAAAGAAACCAAAACTCCTTTTTTCTTTGGCCTAGCCCTCCCATACAAAAACTAGTTTATGGTACAACTAGTTATGGTACAACTAAAGTTCATACATAAAATTTACTGGAATGCTCTGAGTTCAATGGCTGTTGATTTTATACATGTTGTCTTAAATGTTGAAATATTGAGACATGGTCAAACAAGTAAAATTTCATAAAGAAGCACCGTTTTGGTCACAGGAGATCACGATAAAGTGGCTGACCTCTTCACAATATGTACAAAAATATAAAATGTAAATAAAAATACAAACAAATCCTTGTCTTGCTTATTTCATTGTGAATGCTGGAAATCGGAAGTTGTGGTCGGTCCTCTAGAAAATTTTGAATTGGGGGTCAGTTGGTTGACATGGGTGACGAACTTGAAAATGACCATGTTTTATGTATTTGAGTCCTTTATGCCACTGGCTCCAACAGTTGGGTTAAAGCAGAGGCGTCTACACCTGCTCAGCAATATGAAACGATCCTTTAATCATCATCATCCGTCTTCTGCTTCTTGGGGTCGACGTCATCCTGATAGAAAAGTGGGATTAAAAATTAATTACTTGAACTGTGACAAAAAGTGGAAACCACCACCACTCGGTTCCAGTATTCTTTAGGTAGCGATTCATGATTGTACCTCATCATCTTCATCGTCCTCTTCAGCAGCTCGTTTTGTTCCTCCACCTAGCTCGTCGTCATCTTCATCCTCGTCCTCATCCTCATCACCTGCAGAAAAGAACCATTAGCCACATGATTAAAACGTCTTTAAATTAGTTTGTCGCCATGTCAGAAAATTGTGAACATTAATGTTGCACCAACCCTCTCCTTCCTCTTCATCTTCCTCATCTACCTCATCATCTTCTTCATCATCAATTTCAGGCTCTCCGTTTTCTTCATTCTCCTGTTTACACATTTCAAAAAAGATCAGTGCATGTTCTCCATTAAATACCAAAGTAGTGGAATAGTAGAGAAGTCAAGAACACTGGCCAGGCAATTTAATTACCTTTCCATTAGTGGCATCTTTTCCATTTTCCTTCTCCTCAAGGAGCTTCTTCTCTTTCAGGTCCTTGCGGAGATTTCTGTCGCGGAGTCAACCTTCGTATCGGCCATAATTAATATTGTGTATCAATAAAATTCGGAACGAAGGAAAATGCGAAAATAATCCGCCTCTATCCTCCAATAATCACTATTGTAATGAAGCTTTCTTATGCCGACGGCATGTGATGAAGGAGGCTTTAATATAGATTTGCGGGCGGAGCATGAGAGGCGGTCGGCTGTATTTAATTGGTTAGTGGACTCCGAGGAGGTGTGTTTTCAAGGCAATAGAGTGGAACAATGGAAAGTATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25740 lncRNA downstream 2233 567998 ~ 568221 (-) True G22810
TU25737 lncRNA downstream 7024 563208 ~ 563430 (-) True G22807
TU25727 lncRNA downstream 39433 530806 ~ 531021 (-) True G22798
TU25625 lncRNA downstream 119338 450523 ~ 451116 (-) True G22709
TU25707 lncRNA downstream 130274 439122 ~ 440180 (-) True G22781
TU25802 lncRNA upstream 68015 641943 ~ 644060 (-) True CI01000003_00640353_00641395
TU25756 lncRNA upstream 83508 657436 ~ 732257 (-) True G22823
TU25752 lncRNA upstream 142517 716445 ~ 718092 (-) True G22821
TU25754 lncRNA upstream 168374 742302 ~ 744603 (-) False G22822
TU25755 lncRNA upstream 168374 742302 ~ 744603 (-) True G22822
CI01000003_00473640_00508021.mRNA mRNA downstream 62433 473576 ~ 508021 (-) True CI01000003_00473640_00508021
CI01000003_00458786_00461307.mRNA mRNA downstream 109147 458468 ~ 461307 (-) True CI01000003_00458786_00461307
CI01000003_00418856_00424844.mRNA mRNA downstream 144485 418477 ~ 425969 (-) True CI01000003_00418856_00424844
CI01000003_00410927_00411601.mRNA mRNA downstream 157946 410569 ~ 412508 (-) True CI01000003_00410927_00411601
CI01000003_00388122_00389931.mRNA mRNA downstream 180427 388122 ~ 390027 (-) True CI01000003_00388122_00389931
CI01000003_00640353_00641395.mRNA mRNA upstream 66014 639942 ~ 643476 (-) False CI01000003_00640353_00641395
CI01000003_00719773_00720087.mRNA mRNA upstream 145655 719583 ~ 720332 (-) True CI01000003_00719773_00720087
CI01000003_00806620_00830978.mRNA mRNA upstream 232423 806351 ~ 831623 (-) True CI01000003_00806620_00830978
CI01000003_01194276_01196374.mRNA mRNA upstream 619388 1193316 ~ 1197019 (-) True CI01000003_01194276_01196374
CI01000003_01200556_01220189.mRNA mRNA upstream 626124 1200052 ~ 1220189 (-) True CI01000003_01200556_01220189
TU25632 other downstream 500710 50512 ~ 69744 (-) True G22716

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU14416 True 3167 lncRNA 0.41 2 NC_056700.1 5702617 ~ 5705885 (+)