RNA id: TU25754


Basic Information

Item Value
RNA id TU25754
length 2282
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G22822
representative False

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 742302 ~ 744603 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAAATGAGTTGTTCAGACTTTTTATTAATCACTTGCAGACTTATCATAAAACTGAGAATCAGTGCATGTGTGATGTTATAAACCAATTATGTCCACAACAATACTACTGACGTTACATAGCATTCTTCAGAAACTTTTTAAAAGATATGGACATACACACAATCATGAAACTGCAAGACATTGTTAGAATAATCTTTAATCTCCATTTTCTTCTCTTTCACATTGTTTTCTGTTCAAACAGGACGTATTTCAAAGTTACACATGAGTGTCTTTCTCAGAGCATAAACATTATTTTCCACTTGCAACTCGATTCATATTGATGTCTTCTGATGGCCATATGATATGATAAACAGATGACGCTGGTATCAAAAGGTAACCAATAAAAACAATTAGCTTAATAGTTTCAATTTAATACCAGTTTGATGTTGAATACAATTTGAGTGAAGTTAAATACACACAAAAAAAAAAAAAAGTATTTCAATCTTTAAAGCTTCATAATTCTACAAGGCACATACAAGTAAATGATACACCAGAAACAAAAGAAATATGAAAACCGAGTAAGAGAACAGAACAGAATCTTATAGAAGGCCATGGCAGGATCTTACAGAGAAGGTTTCTCTAGTTTTCAATCTCTACTGTGATCCTCACCCACTCCACATTTTATTAATCCAAGGCAGAAGAAGGTAACAGCACTTGATTATTCATGAGAAACTGACAATAGATTACATGACTCACAACAGATAACTAGTATGGTAAGAGTGTGTGAATATAGACGATTTGTACATCATCATGGGAAACACTGTTCCCGATAATTACATCCACACCACAGTGAAATATGAGGGGCACTGCCCTCGATATCAACACATCGGTAGGCAAAAACTACCATCATCTTCTTCGCATTATGGAAGGCACTGCTCCCGATAATTATTCTGGATCAGGTATAACATTGATTCAAAAGGAGGATGCCAGAGACTAATGGACAACAGTAATTTTCTGAAAATTGTTTATTATTATTATCATCATTATATTATTTAAGAAATGCACTGTGGTAGTTTCTGGTCATAGCTTTTGAAAACAAGGTTATCTCCATAGCAGATGCTGCTTTCACATTTCGACAGTATAACTGTCATAATTATGGAAGGCACTGCTTCCGATAATTATACATTTGTTTAAAAAGGCGTTACAAAATGCTATTTATAGTGATCCCTGTCACTGATAAATATTTATAAAAAAACAAAAAACAAAAAAAAAAAACACTAATAAATAGATATTTCAGAGCCACATAGGAAAGCCTCTTTCTACCATTTGACAGAACTGATCTGAAATGCCCCTGAAAAAGCGTATTCAACCGAAAAATTGGAAAAATACTGTGCTTTAGGAGGTGTGTCATCACTACAGGTAAGTCAAAAATAACAATGGCTAGTTGTCTAACTGTAGCCTGTATAAGAAAAACATCAACCTCAAAATCCAGACTGTTTAGGTTATTGTGAAAGTAGTTCCTAAAAGGTGTCTGAAAATGATGAAAGTAACAAACCAATAACATTCCAAATTTGTGTAATCTAAACTAGATCTTAAAGGAACAGTTCACCCAAGAATAACAATTCTGGGTTATTTACCATGATGTCATTCTAACCCCTTATGAATTTTGTTCTGTTCTTAACACAGATACTGAATTGATTCAAAGGACGAATTATAGCACATGAGTGATATGAGCTATTTTTATAATATTTTATGGTGCTCTTGTGTCCTGTATTGAAGTTTGAAATCGCCAGTAATTTTAATGGAAAAGAGCAACCAGTACGTTTTTCAAAATATCTTATGTTGTGTTTCACAGAAGAGGTTTAGAAGGACATAAGGGTGAGTAAAGGATGACAGAATTGTTATTCTTGGGTCAACTACGGTTTTAAATATTGAGGTAAACCTCTAATCATGAATTCACGTTAATAGAGCACCAATATCATTTTCTACTTTAATTTTCCTTTTTTGTCTTGAGTGATGGTTCAAAGTTATCAAATTGTTAAAGAGGTAAGCTGAATCTGCTTGTCTAAATTTCATTATCCATATCCCATACTTCCCCTGCCAATGCATTGGCACAGCCCTGGATGGTCCAGGTAGCAAGAGCAAACTGATTCTTGAATTGGTCGACGTCAGCAGATTCAAGACCTACTTTAATAGCTTCAAGGTGATTCACCAGAGCTGTCAGTGTGTGCGAGCCAGAGCCCAGCACAATGTGCCGGAACAGACTCTCCCGTGGAGAAACGTAGGGAGAGAGGAGACTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25756 lncRNA downstream 10045 657436 ~ 732257 (-) True G22823
TU25752 lncRNA downstream 24210 716445 ~ 718092 (-) True G22821
TU25802 lncRNA downstream 98242 641943 ~ 644060 (-) True CI01000003_00640353_00641395
TU25608 lncRNA downstream 168374 570454 ~ 573928 (-) False G22698
TU25611 lncRNA downstream 168374 570550 ~ 573928 (-) False G22698
TU25921 lncRNA upstream 113824 858427 ~ 860858 (-) True G22973
TU25942 lncRNA upstream 138604 883207 ~ 883409 (-) True G22983
TU25943 lncRNA upstream 146567 891170 ~ 891619 (-) True G22984
TU25947 lncRNA upstream 180206 924809 ~ 925081 (-) True G22988
TU25955 lncRNA upstream 200427 945030 ~ 950078 (-) False G22996
CI01000003_00719773_00720087.mRNA mRNA downstream 21970 719583 ~ 720332 (-) True CI01000003_00719773_00720087
CI01000003_00640353_00641395.mRNA mRNA downstream 98826 639942 ~ 643476 (-) False CI01000003_00640353_00641395
CI01000003_00473640_00508021.mRNA mRNA downstream 234281 473576 ~ 508021 (-) True CI01000003_00473640_00508021
CI01000003_00458786_00461307.mRNA mRNA downstream 280995 458468 ~ 461307 (-) True CI01000003_00458786_00461307
CI01000003_00418856_00424844.mRNA mRNA downstream 316333 418477 ~ 425969 (-) True CI01000003_00418856_00424844
CI01000003_00806620_00830978.mRNA mRNA upstream 61748 806351 ~ 831623 (-) True CI01000003_00806620_00830978
CI01000003_01194276_01196374.mRNA mRNA upstream 448713 1193316 ~ 1197019 (-) True CI01000003_01194276_01196374
CI01000003_01200556_01220189.mRNA mRNA upstream 455449 1200052 ~ 1220189 (-) True CI01000003_01200556_01220189
CI01000003_01348419_01352984.mRNA mRNA upstream 601996 1346599 ~ 1352984 (-) True CI01000003_01348419_01352984
CI01000003_01368353_01374263.mRNA mRNA upstream 623750 1368353 ~ 1374263 (-) True CI01000003_01368353_01374263
TU25632 other downstream 672558 50512 ~ 69744 (-) True G22716

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU14378 True 2239 lncRNA 0.49 2 NC_056700.1 5589281 ~ 5591587 (+)