RNA id: TU25921


Basic Information

Item Value
RNA id TU25921
length 997
lncRNA type antisense_over
GC content 0.29
exon number 2
gene id G22973
representative True

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 858427 ~ 860858 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTCCAAATAAACCAAGTGTGGAAATGCTCTCAGACTGATTTGTGAACAGGACAGTTGAAGAGACCAGATTCAAAATAACAATTCGCTCACAAATTGTACATTACTATGGCTAACAAATTAGTTTTTAATCCGAACGCTATCTATCCAAGGATTTGTTTGTGTGCAGAGCATAATTTAAATATAATAATAATGTAATTTATTCTTGTGATGGCAAAGCTGAATTTTGACTGAGAAATGACTGAGGTGCCCTTGAGCAAGGCACCTAACCTCCAATCAATCCCCGGGCACCACAGCAAAAATGACTGCTCACTGCTCTGGGTGTGTGTGTCCACTACTCACTACTCCTAATGTGTGCACTAACTTGGATGGGTTAAATTCAGAGGGCAAATTCTGAGTATGGGTCACCATACTTGAGCTTCACATGTCACTTTCACTTATTTTACTTTCACCTCTGATGAATAGAAAGTTCAAAAGAACAGCATTTATTTGAAATAGTAATTTTTTTATGCAAAAATCTTTTGATCAAGTTAATGCATCACTTCATTATTTAGAGGTTATTATTTTTTATGATTTAAGATGTTACTAATGTTCAATTTAGGCCTGGAAACAATTTTAAAATGTCTTGACATTTCCATGTTTTCTATGACTGTGGGAACCCTGTTTTTTAATATTTAAACTCTTCTAGTTGAAAGTCATTCGCTTACTCTTAGCACGTCCAGGGAGTTGAGTTGGTCTGGCAGAGTTGAAATCCAGCCCTAGCACATCTGGAGGATCCATGGGATTCCCGAGATAAAGATCATCGATCCTGTCAGGAAAGCCCCAGCAGCGGTGAGGATTAGTGTCTCCATGGCCTGTGTGAATGAAGCTGTTCTTCAGTGGACGGCTTATGTCATGGGCAGAGAGACCTGCAACTGACGTGACGGTGTTCCTGGGAAACTGACCAACCTTCAGGGTACGCTTGTTCTGACCTCTCCACCAGTAGTGCTCTGCCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25754 lncRNA downstream 113824 742302 ~ 744603 (-) False G22822
TU25755 lncRNA downstream 113824 742302 ~ 744603 (-) True G22822
TU25756 lncRNA downstream 126170 657436 ~ 732257 (-) True G22823
TU25752 lncRNA downstream 140335 716445 ~ 718092 (-) True G22821
TU25802 lncRNA downstream 214367 641943 ~ 644060 (-) True CI01000003_00640353_00641395
TU25942 lncRNA upstream 22349 883207 ~ 883409 (-) True G22983
TU25943 lncRNA upstream 30312 891170 ~ 891619 (-) True G22984
TU25947 lncRNA upstream 63951 924809 ~ 925081 (-) True G22988
TU25955 lncRNA upstream 84172 945030 ~ 950078 (-) False G22996
TU25956 lncRNA upstream 84172 945030 ~ 947253 (-) True G22996
CI01000003_00806620_00830978.mRNA mRNA downstream 26804 806351 ~ 831623 (-) True CI01000003_00806620_00830978
CI01000003_00719773_00720087.mRNA mRNA downstream 138095 719583 ~ 720332 (-) True CI01000003_00719773_00720087
CI01000003_00640353_00641395.mRNA mRNA downstream 214951 639942 ~ 643476 (-) False CI01000003_00640353_00641395
CI01000003_00473640_00508021.mRNA mRNA downstream 350406 473576 ~ 508021 (-) True CI01000003_00473640_00508021
CI01000003_00458786_00461307.mRNA mRNA downstream 397120 458468 ~ 461307 (-) True CI01000003_00458786_00461307
CI01000003_01194276_01196374.mRNA mRNA upstream 332458 1193316 ~ 1197019 (-) True CI01000003_01194276_01196374
CI01000003_01200556_01220189.mRNA mRNA upstream 339194 1200052 ~ 1220189 (-) True CI01000003_01200556_01220189
CI01000003_01348419_01352984.mRNA mRNA upstream 485741 1346599 ~ 1352984 (-) True CI01000003_01348419_01352984
CI01000003_01368353_01374263.mRNA mRNA upstream 507495 1368353 ~ 1374263 (-) True CI01000003_01368353_01374263
CI01000003_01424386_01424816.mRNA mRNA upstream 563492 1424350 ~ 1424915 (-) True CI01000003_01424386_01424816
TU25632 other downstream 788683 50512 ~ 69744 (-) True G22716

Expression Profile