RNA id: CI01000003_01368353_01374263.mRNA


Basic Information

Item Value
RNA id CI01000003_01368353_01374263.mRNA
length 810
RNA type mRNA
GC content 0.47
exon number 7
gene id CI01000003_01368353_01374263
representative True

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1368353 ~ 1374263 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGCCGTCACTGACGCTCAGGGATTTAGGTCTGACAGATCTAGGAGTCGGTCAGCTAGATGCGCTGGTGGAGAAGCTTCTTCCCTGTGTTTCTCAGCAGGACTTGAACTCACAACTGAGGACTGAGCCAAATATCTGGAGGACTTCCCATCTCTCCTCAGATTCTTTCTTTCACAACAAACATGGGTTTTCCAGAATGGGTGGTGTCTCTCCTGTCTTCTCCAGGCAAAACAAGTCACCTCTCCAAACACTATGTACAGACCTCCAATATTTGCCATTGTTGGTCCCAAATCGAGGCTTTAAAACTCTGAAGTCCAAAACACGGCGTCTACAGGGAGGCTTTGACAGTTCAGCGGAGCCTGAGGGATTTACGCCATCATTTATGAAGGGTCTCCTCACACGAGACAAAGGGCCAGATGTTGAAACTCTGGACAAGCTCCTTAAAAACAAAAATATTCCTGATGGTCAGCATGATGCTTTTAAGACTGGTTTTGCCGAGGGCTTCCTCAAAGCTCAAGCCCTAACACAGAGAACCCAAGGCATGAGGATGCGACTGATACTATTGGTGCTTTTGCTGTTGGGCTTGTATGGACTCTCAAAAACACCTTTCTTATCAGGTAAATGTTCCAAAGAAACTTCTGCATTGCGATTCCGAACCACATCAGGCCTGGACTCAGCAGTGGACCCTGTCCAGATGAAGAACGTCACCTTCGAGCATGTGAAGGGTGTGGAAGAGGCCAAAAATGAGCTGCAGGAGGTGGTGGAGTTTCTTCGGAACCCTCAGAAGTTCACTCTTTATCTTTACATTTAC

Function

GO:

id name namespace
GO:0004176 ATP-dependent peptidase activity molecular_function

KEGG:

id description
K08955 YME1; ATP-dependent metalloprotease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26482 lncRNA downstream 40391 1327518 ~ 1327962 (-) True G23463
TU26477 lncRNA downstream 56288 1311582 ~ 1312065 (-) True G23458
TU26396 lncRNA downstream 291047 1076919 ~ 1077306 (-) True G23393
TU26395 lncRNA downstream 295801 1072330 ~ 1072552 (-) True G23392
TU26394 lncRNA downstream 296433 1071541 ~ 1071920 (-) True G23391
TU26505 lncRNA upstream 21186 1395449 ~ 1396836 (-) True G23485
TU26500 lncRNA upstream 42546 1416809 ~ 1421558 (-) True G23481
TU26501 lncRNA upstream 70968 1445231 ~ 1449301 (-) False G23482
TU26502 lncRNA upstream 70968 1445231 ~ 1449391 (-) True G23482
TU26498 lncRNA upstream 76637 1450900 ~ 1452728 (-) True G23479
CI01000003_01348419_01352984.mRNA mRNA downstream 15369 1346599 ~ 1352984 (-) True CI01000003_01348419_01352984
CI01000003_01200556_01220189.mRNA mRNA downstream 148164 1200052 ~ 1220189 (-) True CI01000003_01200556_01220189
CI01000003_01194276_01196374.mRNA mRNA downstream 171334 1193316 ~ 1197019 (-) True CI01000003_01194276_01196374
CI01000003_00806620_00830978.mRNA mRNA downstream 536730 806351 ~ 831623 (-) True CI01000003_00806620_00830978
CI01000003_00719773_00720087.mRNA mRNA downstream 648021 719583 ~ 720332 (-) True CI01000003_00719773_00720087
CI01000003_01424386_01424816.mRNA mRNA upstream 50087 1424350 ~ 1424915 (-) True CI01000003_01424386_01424816
CI01000003_01601113_01624224.mRNA mRNA upstream 226702 1600965 ~ 1624224 (-) True CI01000003_01601113_01624224
CI01000003_01632757_01671893.mRNA mRNA upstream 256344 1630607 ~ 1671893 (-) True CI01000003_01632757_01671893
CI01000003_01807697_01809455.mRNA mRNA upstream 432867 1807130 ~ 1809455 (-) True CI01000003_01807697_01809455
CI01000003_01836259_01849326.mRNA mRNA upstream 461937 1836200 ~ 1849326 (-) True CI01000003_01836259_01849326
TU25632 other downstream 1298609 50512 ~ 69744 (-) True G22716

Expression Profile