RNA id: TCONS_00030560


Basic Information

Item Value
RNA id TCONS_00030560
length 1734
RNA type mRNA
GC content 0.49
exon number 9
gene id XLOC_015237
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9755422 ~ 9779959 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGCTTCTGTCAAATCGGAAGGTCTGAGATCACGAATATCGAGACATTTAAATCGCCGTACACTTCCGACTCCTGTCAGCCTTCGACTTGAGGAAACCCATAAACCTACACCTGCAAAGAGTCTTTCATCACCACCTTACCGCAAAACGCACATTAAAGCACACGGAGCCTGAATGGAGGCCCACGGTTCAGCGCGACTGTcaaggaagagaaagagagatggtTCAAACGGAGAGCCAGAGGAAGGAGAAAAACCACTGAAGTTCAAAAGATGCACGGTGGGTCTGAAATATCCAGCTCCTTATGCAGATCAGCTCGAGTCAATGGAAGATAAGCAGTATCAGCGTGTCACCATAGAGGAAGCTCGCAGAGGCACGCCACCCGACAGACCTGTGCGGGTGTACGCTGATGGGATCTTCGACATGTTCCACTCAGGACATGCTCGCGCTCTCATGCAGGCTAAATGCCTCTTTCCAAACACTCACCTTATTGTAGGTGTTTGCAGTGATGACCTCACGCACAAGCTAAAGGGCTTCACCGTCATGAACGAGGACGAGCGCTATGATGCTGTTAGTCACTGTCGCTATGTGGATGAGGTGGTCCGGAATGCCCCATGGACTCTTACACCAGAGTTCCTCACCAAACATCGGATTGACTTTGTGGCCCATGATGATATCCCATACTCCTCAGCTGACAGTGATGATGTTTACAAGCACATCAAAGATGCAGGAATGTTTGCACCAACCCAAAGGACAGAGGGCATCTCCACCTCTGACATCATCACGCGCATCGTGCGAGATTATGATGTGTACGTCAGACGGAATCTTCAGCGTGGCTACACTGCAAAAGAGCTGAACGTCAGCTTCATCAATGAAAAGAAGTACAACCTTCAGGAGCGTGTGGACAAGGTGAAGAAGAAGGTGAAGGACGTGGAGGAGAAAAGTAAAGAGTTTGTGCAGAAGGTGGAGGAGAAGAGCATCGACCTGATCCAGAAATGGGAAGAGAAGTCCCGGGAATTCATTGGCAACTTCCTGCAGATGTTTGGACCGGAGGGAGCACTGAAGCACATGCTGAAGGAGGGTAAAGGTCGAATGCTTCAGGCCATCAGTCCAAGGCAGAGTCCCAGCAGCAGTCCCACACGAGAGCGCTCGCCTTCCCCAACCTTCCGTCTGCCCTTCTTCAACAAAACCTCCCCGCCGTCCTCCCCATCCTCACACCACAGCAGTGCCCTGTCCGGCTACACCTACGCCGCCCGTGGACAGGCCATCAGCGAGGACGAGGAGGACGACGAAGATTAGAGTGCCAAAGCACACCACACATCTGTCTTCCAACACCGGCAAGCCAACCTCAGAAACCAAGCAATCCCTTCACCAGTTTTGCGTTCTGTGTTATTAACCCATATGAAGGCTTAAAACGGAGTGCTGTGCAGAACTTGTTAACTGTGAGTCACTTACGGTGGTTTTTACGTCAATGTCAGCGATGGGATGTGAGTATTTAAACGCGTGGGATTGGCTTTTGTGGTGTTTTAGATCGAGTGCTCATGGTATTGAGTTtccttttaatttcagttttaaaaacttttgttCTTATTATTATAGTACGTAATTGTTTGACATCTCTCAGGTCACGTGTCTCTTCTTATAATGGCCGAGATTGATGTTTGATGTCCAAAACACTGCAACTCATAACTGTAAGATGACTACAAATAACTATACTAAAAGAGCTGTCGCACAA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004105 choline-phosphate cytidylyltransferase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0031210 phosphatidylcholine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-108 Predicted to enable choline-phosphate cytidylyltransferase activity and phosphatidylcholine binding activity. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be active in endoplasmic reticulum. Is expressed in swim bladder. Human ortholog(s) of this gene implicated in spondylometaphyseal dysplasia with cone-rod dystrophy. Orthologous to human PCYT1A (phosphate cytidylyltransferase 1A, choline).

Ensembl:

ensembl_id ENSDART00000018524

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033480 lncRNA upstream 98375 9651716 ~ 9657047 (+) False XLOC_015236
TCONS_00033481 lncRNA upstream 98375 9652000 ~ 9657047 (+) False XLOC_015236
TCONS_00033483 lncRNA upstream 98375 9652353 ~ 9657047 (+) False XLOC_015236
TCONS_00033482 lncRNA upstream 98375 9652353 ~ 9657047 (+) False XLOC_015236
TCONS_00033485 lncRNA upstream 98375 9652382 ~ 9657047 (+) False XLOC_015236
TCONS_00030570 lncRNA downstream 58112 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00033487 lncRNA downstream 504802 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00030592 lncRNA downstream 606520 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033488 lncRNA downstream 783540 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00033489 lncRNA downstream 824554 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00030559 mRNA upstream 164572 9560740 ~ 9590850 (+) True XLOC_015235
TCONS_00030558 mRNA upstream 195115 9552456 ~ 9560307 (+) True XLOC_015234
TCONS_00030557 mRNA upstream 196507 9536021 ~ 9558915 (+) True XLOC_015233
TCONS_00030556 mRNA upstream 616925 9061885 ~ 9138497 (+) True XLOC_015230
TCONS_00030554 mRNA upstream 914526 8780443 ~ 8840896 (+) False XLOC_015229
TCONS_00030562 mRNA downstream 41798 9821757 ~ 9842240 (+) False XLOC_015238
TCONS_00030563 mRNA downstream 41811 9821770 ~ 9841522 (+) False XLOC_015238
TCONS_00030564 mRNA downstream 41823 9821782 ~ 9836238 (+) False XLOC_015238
TCONS_00030565 mRNA downstream 41831 9821790 ~ 9841642 (+) False XLOC_015238
TCONS_00030566 mRNA downstream 42360 9822319 ~ 9838713 (+) False XLOC_015238
TCONS_00030545 other upstream 1566022 8189285 ~ 8189400 (+) True XLOC_015223
TCONS_00030543 other upstream 1708165 8045416 ~ 8047257 (+) True XLOC_015221
TCONS_00030536 other upstream 2031481 7723870 ~ 7723941 (+) True XLOC_015217
TCONS_00030535 other upstream 2031839 7723394 ~ 7723583 (+) True XLOC_015216
TCONS_00030534 other upstream 2034032 7721212 ~ 7721390 (+) True XLOC_015215
TCONS_00030568 other downstream 51379 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030569 other downstream 58073 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030571 other downstream 95570 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030577 other downstream 193922 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030590 other downstream 426042 10206001 ~ 10206118 (+) True XLOC_015249

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_01946043_01954044.mRNA True 4109 mRNA 0.38 8 CI01000004 1945784 ~ 1956769 (-)