Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00030566 |
| length | 786 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 8 |
| gene id | XLOC_015238 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 9821757 ~ 9842240 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0005544 | calcium-dependent phospholipid binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050522-310 | Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region and nervous system. |
| ensembl_id | ENSDART00000144078 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033483 | lncRNA | upstream | 165272 | 9652353 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00033487 | lncRNA | downstream | 446048 | 10284761 ~ 10285629 (+) | True | XLOC_015251 |
| TCONS_00030592 | lncRNA | downstream | 547766 | 10386479 ~ 10416272 (+) | True | XLOC_015252 |
| TCONS_00033488 | lncRNA | downstream | 724786 | 10563499 ~ 10564386 (+) | True | XLOC_015253 |
| TCONS_00033489 | lncRNA | downstream | 765800 | 10604513 ~ 10607329 (+) | True | XLOC_015254 |
| TCONS_00030612 | lncRNA | downstream | 1216603 | 11055316 ~ 11063844 (+) | True | XLOC_015262 |
| TCONS_00030560 | mRNA | upstream | 42360 | 9755422 ~ 9779959 (+) | False | XLOC_015237 |
| TCONS_00030561 | mRNA | upstream | 42796 | 9757453 ~ 9779523 (+) | True | XLOC_015237 |
| TCONS_00030559 | mRNA | upstream | 231469 | 9560740 ~ 9590850 (+) | True | XLOC_015235 |
| TCONS_00030558 | mRNA | upstream | 262012 | 9552456 ~ 9560307 (+) | True | XLOC_015234 |
| TCONS_00030557 | mRNA | upstream | 263404 | 9536021 ~ 9558915 (+) | True | XLOC_015233 |
| TCONS_00030572 | mRNA | downstream | 79965 | 9918678 ~ 9941230 (+) | False | XLOC_015240 |
| TCONS_00030573 | mRNA | downstream | 80222 | 9918935 ~ 9941405 (+) | True | XLOC_015240 |
| TCONS_00030574 | mRNA | downstream | 107408 | 9946121 ~ 9957805 (+) | True | XLOC_015241 |
| TCONS_00030575 | mRNA | downstream | 132229 | 9970942 ~ 9982960 (+) | False | XLOC_015242 |
| TCONS_00030576 | mRNA | downstream | 134974 | 9973687 ~ 9983661 (+) | False | XLOC_015242 |
| TCONS_00030545 | other | upstream | 1632919 | 8189285 ~ 8189400 (+) | True | XLOC_015223 |
| TCONS_00030543 | other | upstream | 1775062 | 8045416 ~ 8047257 (+) | True | XLOC_015221 |
| TCONS_00030536 | other | upstream | 2098378 | 7723870 ~ 7723941 (+) | True | XLOC_015217 |
| TCONS_00030535 | other | upstream | 2098736 | 7723394 ~ 7723583 (+) | True | XLOC_015216 |
| TCONS_00030534 | other | upstream | 2100929 | 7721212 ~ 7721390 (+) | True | XLOC_015215 |
| TCONS_00030571 | other | downstream | 36816 | 9875529 ~ 9875645 (+) | True | XLOC_015239 |
| TCONS_00030577 | other | downstream | 135168 | 9973881 ~ 9982953 (+) | True | XLOC_015242 |
| TCONS_00030590 | other | downstream | 367288 | 10206001 ~ 10206118 (+) | True | XLOC_015249 |
| TCONS_00030605 | other | downstream | 1167944 | 11006657 ~ 11006790 (+) | True | XLOC_015261 |
| TCONS_00030617 | other | downstream | 1405173 | 11243886 ~ 11244007 (+) | True | XLOC_015265 |
