RNA id: TCONS_00030543


Basic Information

Item Value
RNA id TCONS_00030543
length 520
RNA type processed_transcript
GC content 0.41
exon number 2
gene id XLOC_015221
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 8031234 ~ 8050498 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GgctccacttatagtgctgagaTATTTCAGGCAGGATATGCCATTTCAGCGTCACGGGTGTGAAACTTAAGCTTGCTCAGGAGAGGCTCTCGGTTGGTTTCCTTGTGTCACAGACAGCTAGAATAATAACTTTCTGCAACCACATGGATGGGCTTAACTACATAGTCATGGGACAAACCGATGAACACGGACAAGGCGTTATTTCCCCTTATAACTTTGTGATGCTCTTCAAAACCAAAAAGCAACAGGATTTGGCCGTGCTGAAAAATATACGCTGCTGATGTGCACAGGTGACCAAAGCCGTGTCTGGATTTGCATTCACTTTATGTACATGCGTTTGATAACATCCATACTTGGACTCTTTTAGTAATAACGGTAACACAGTGTCTTTACTACAAGTAACATGAAAAGATTCCAGCGACAAGCAATTTGACTGTTTCGATATGACAGAAACATTTTAATACCAGCCACTGCATTTGTTAACATTGCAttcttcattatttaaaatatctggcTACCG

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-25 Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Orthologous to human PCOLCE2 (procollagen C-endopeptidase enhancer 2).

Ensembl:

ensembl_id ENSDART00000142345

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033474 lncRNA upstream 277143 7763907 ~ 7768273 (+) False XLOC_015218
TCONS_00033475 lncRNA upstream 277143 7763911 ~ 7768273 (+) True XLOC_015218
TCONS_00030530 lncRNA upstream 322089 7715806 ~ 7723327 (+) False XLOC_015213
TCONS_00033473 lncRNA upstream 324703 7715792 ~ 7720713 (+) False XLOC_015213
TCONS_00033237 lncRNA upstream 383315 7657408 ~ 7662101 (+) True XLOC_015212
TCONS_00033476 lncRNA downstream 437137 8484394 ~ 8488138 (+) False XLOC_015225
TCONS_00033238 lncRNA downstream 437754 8485011 ~ 8488138 (+) False XLOC_015225
TCONS_00033239 lncRNA downstream 437783 8485040 ~ 8488138 (+) False XLOC_015225
TCONS_00033477 lncRNA downstream 438563 8485820 ~ 8488138 (+) False XLOC_015225
TCONS_00033240 lncRNA downstream 438574 8485831 ~ 8487964 (+) True XLOC_015225
TCONS_00030540 mRNA upstream 171032 7851493 ~ 7874384 (+) True XLOC_015220
TCONS_00030538 mRNA upstream 171341 7847480 ~ 7874075 (+) False XLOC_015220
TCONS_00030539 mRNA upstream 175803 7849890 ~ 7869613 (+) False XLOC_015220
TCONS_00030537 mRNA upstream 216016 7818368 ~ 7829400 (+) True XLOC_015219
TCONS_00030531 mRNA upstream 318168 7715810 ~ 7727248 (+) False XLOC_015213
TCONS_00030544 mRNA downstream 65192 8112449 ~ 8114608 (+) True XLOC_015222
TCONS_00030546 mRNA downstream 213852 8261109 ~ 8312199 (+) True XLOC_015224
TCONS_00030547 mRNA downstream 602036 8649293 ~ 8663104 (+) False XLOC_015226
TCONS_00030548 mRNA downstream 602099 8649356 ~ 8660204 (+) True XLOC_015226
TCONS_00030549 mRNA downstream 669898 8717155 ~ 8777496 (+) False XLOC_015228
TCONS_00030536 other upstream 321475 7723870 ~ 7723941 (+) True XLOC_015217
TCONS_00030535 other upstream 321833 7723394 ~ 7723583 (+) True XLOC_015216
TCONS_00030534 other upstream 324026 7721212 ~ 7721390 (+) True XLOC_015215
TCONS_00030533 other upstream 324407 7720939 ~ 7721009 (+) True XLOC_015214
TCONS_00030532 other upstream 324787 7720559 ~ 7720629 (+) True XLOC_015213
TCONS_00030545 other downstream 142028 8189285 ~ 8189400 (+) True XLOC_015223
TCONS_00030568 other downstream 1784081 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030569 other downstream 1790775 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030571 other downstream 1828272 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030577 other downstream 1926624 9973881 ~ 9982953 (+) True XLOC_015242

Expression Profile

//