RNA id: TCONS_00030540


Basic Information

Item Value
RNA id TCONS_00030540
length 1761
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_015220
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7847480 ~ 7874384 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAACAACTAAAAGTGTATTGATGTAATAAAAATTTTGCTTGTTAGTTATAGCAAGTTAGCAAACGTAAACTAATGACATTTACCTGTATTATAAACACCTCAACATTTCTTTTAATGGCCCAGCTCTTCATGTGTGGGATGTGGCTGCTCATGCAGTTTGCCGTCATGGGTCTGTACTGGGACATCCCACCCCTGGATTCCTTTGCTGAGCAGCAGATGCCCCTCAGAGAGGTCAGAGGTGAAGAAGATGAGCCCCTCATGAGTCTGGAGGATGATGACAGGACTGCGGTAGCGGACTCGTATGGCTCGCTCAATCCAGAACAGACCGAGACCCAACTCTCATCCCAAATCCCACCATCTCCTCCAGAGTCCCCTCCTCCAGACACCTCCGACCCCTTTGAAAACTTCAGTGCCAGTCGAGAGTTTCTGAGGGAGGAGGTAGTGGTTCTTCTCACCGCTCAGTTCATCACTCTCTTCAATCAGACAGCACTCGAGACCATGGTGACCCCGCTGACGCAGAAGTACTTTGGCTTTGGCGAGCTGGGCAACAGTGTGATGTACAGCCTGTGTGGGGTGGAGGTAATTGCAGGTTTCTTCCTGGTGCGCTGGCTGAGCCGTGTGCTGGAGGACCGGGTGGTGCTGGCAGTGGGGCTGCTCATCTGCAGCGGGGCCTGTGTCTGGTGCCTCATCTTCCTGGCCAATCCACAGGGTGGTTTGGGGTTTGAGTTGTTCGAGTTTATCATCGGAGTGTTCCTGCAGTTACTGGGACTTCCTTTCGTTGCTGTGTCTCAGGTGTCCCTCTTTTCTAAGGTCACAGCTGAAAAAACACAAgGCTTTAGTCAGGGCGTGCGACGGTCAGTTGGGGGTCTCGCCACCATTCTTGGTCCCCTGTGGGCAGGGGGTCTAATAGGAAATTTATATGTGATGTTGGGTATGATGATGCTTCTGCTGACCCTCATCATGATCATGATGGTGTTGTCCTATGAGAAGCTGGTGGAGCCGCCCAGGGTGGAGCACGCACAGGATTCAGAGAATGGAGGATAAACAGCATCTTTCATTCAACAGGGAACCAGCACAGAGCAGGAGCCCCTCTTCTCTGCGGTGTGTCTGCCAAAGTTTAGCGCTCGTGTGGGGCTGTGCAGAGCAGATGCTGGAGCAGTGGGAGAGCAGAGACCCTGCCAGAGCTAGCAGACCGCGAACAGCgagacaacacacacacgcacacacacacacaaaccatttGGAATAAACATAGCCTTCATTCTCaaatatttcgatttttttttcccattttttttattgttttaatgttttattgttacCCCTcatcatttgtgaatttattgttaattatagTGTATTTACTGAGTGACACTTTTAATGTAAATGTCATATGATTGGAGGGTCCCCTGATAcagtatgtattttttaataaataaacacatgatggCGCTATTGTCCCTTATTGAGATCCACACACTAAACAACTGCAGGACTTTCtgtctttgtatgtgtgtgtgcgtgtgtgtgtgcgctcgagagagagagagagagagagaaagagagagagagagaatgataaAGGGAAAGACACTGAGTTTCTCGAAAACAAATGATTCATGCAATTATTCTACACAGATCATTGGTCATTTCTTTGGATATTTACTCATCTTAAGAAGGAAATTGAATATTTATGTCTCCTCTGGTGCACGCAATATGCTTTTTGTAGATTGTTTTGAAATAGTATTACTGTAAACTCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000176910

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033474 lncRNA upstream 83220 7763907 ~ 7768273 (+) False XLOC_015218
TCONS_00033475 lncRNA upstream 83220 7763911 ~ 7768273 (+) True XLOC_015218
TCONS_00030530 lncRNA upstream 128166 7715806 ~ 7723327 (+) False XLOC_015213
TCONS_00033473 lncRNA upstream 130780 7715792 ~ 7720713 (+) False XLOC_015213
TCONS_00033237 lncRNA upstream 189392 7657408 ~ 7662101 (+) True XLOC_015212
TCONS_00033476 lncRNA downstream 610010 8484394 ~ 8488138 (+) False XLOC_015225
TCONS_00033238 lncRNA downstream 610627 8485011 ~ 8488138 (+) False XLOC_015225
TCONS_00033239 lncRNA downstream 610656 8485040 ~ 8488138 (+) False XLOC_015225
TCONS_00033477 lncRNA downstream 611436 8485820 ~ 8488138 (+) False XLOC_015225
TCONS_00033240 lncRNA downstream 611447 8485831 ~ 8487964 (+) True XLOC_015225
TCONS_00030537 mRNA upstream 22093 7818368 ~ 7829400 (+) True XLOC_015219
TCONS_00030531 mRNA upstream 124245 7715810 ~ 7727248 (+) False XLOC_015213
TCONS_00030529 mRNA upstream 263833 7557912 ~ 7587660 (+) True XLOC_015209
TCONS_00030527 mRNA upstream 438912 7295515 ~ 7412581 (+) False XLOC_015205
TCONS_00030526 mRNA upstream 565184 7279646 ~ 7286309 (+) True XLOC_015204
TCONS_00030541 mRNA downstream 156850 8031234 ~ 8050498 (+) False XLOC_015221
TCONS_00030542 mRNA downstream 156997 8031381 ~ 8047018 (+) False XLOC_015221
TCONS_00030544 mRNA downstream 238065 8112449 ~ 8114608 (+) True XLOC_015222
TCONS_00030546 mRNA downstream 386725 8261109 ~ 8312199 (+) True XLOC_015224
TCONS_00030547 mRNA downstream 774909 8649293 ~ 8663104 (+) False XLOC_015226
TCONS_00030536 other upstream 127552 7723870 ~ 7723941 (+) True XLOC_015217
TCONS_00030535 other upstream 127910 7723394 ~ 7723583 (+) True XLOC_015216
TCONS_00030534 other upstream 130103 7721212 ~ 7721390 (+) True XLOC_015215
TCONS_00030533 other upstream 130484 7720939 ~ 7721009 (+) True XLOC_015214
TCONS_00030532 other upstream 130864 7720559 ~ 7720629 (+) True XLOC_015213
TCONS_00030543 other downstream 171032 8045416 ~ 8047257 (+) True XLOC_015221
TCONS_00030545 other downstream 314901 8189285 ~ 8189400 (+) True XLOC_015223
TCONS_00030568 other downstream 1956954 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030569 other downstream 1963648 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030571 other downstream 2001145 9875529 ~ 9875645 (+) True XLOC_015239

Expression Profile

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