RNA id: TU421527


Basic Information

Item Value
RNA id TU421527
length 202
lncRNA type sense_over
GC content 0.48
exon number 1
gene id LOC118964542
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14798616 ~ 14805526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttattaaaCAACCTTGAAACCGAGCTACTCCTACTCTGTccatgtctgatctgtgtaaacgtcttgaccaaaccccctggtctgccacaagtGGTGGAGAATAAGGGCACTCTGATAACGTGGTCAGATCAGGGTTGACATTTACACAGCATCAGCATGGACGAGTTGATAGCTGAGTTCGTCCGGGTCCAACAAGCACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421521 lncRNA upstream 5432 14791739 ~ 14793184 (+) True LOC110523276
TU421520 lncRNA upstream 13367 14784948 ~ 14785249 (+) True G370898
TU421519 lncRNA upstream 13737 14784654 ~ 14784879 (+) True G370897
TU421518 lncRNA upstream 14122 14784288 ~ 14784494 (+) True G370896
TU421517 lncRNA upstream 14698 14783631 ~ 14783918 (+) True G370895
TU421538 lncRNA downstream 17942 14816759 ~ 14816984 (+) True G370913
TU421438 lncRNA downstream 102748 14901565 ~ 14916666 (+) True dolk
TU421456 lncRNA downstream 127154 14925971 ~ 14930826 (+) True G370841
TU421459 lncRNA downstream 132101 14930918 ~ 14931459 (+) True G370844
TU421467 lncRNA downstream 141155 14939972 ~ 14940348 (+) True G370852
XM_036976870.1 mRNA upstream 6067 14785471 ~ 14792549 (+) False LOC110523276
XM_021601838.2 mRNA upstream 38849 14706795 ~ 14759767 (+) False sh3glb2b
XM_036976871.1 mRNA downstream 20492 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976872.1 mRNA downstream 20492 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976873.1 mRNA downstream 20492 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976874.1 mRNA downstream 20492 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976875.1 mRNA downstream 20492 14819309 ~ 14892194 (+) False cdk5rap2
TU420985 other upstream 430455 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 472721 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 539483 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 1029320 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1689482 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 5844 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 249361 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 325473 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 992742 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1420789 16219606 ~ 16220933 (+) True G372281

Expression Profile