RNA id: XM_021602060.2


Basic Information

Item Value
RNA id XM_021602060.2
length 5423
RNA type mRNA
GC content 0.48
exon number 19
gene id ccar2
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20923014 ~ 20944043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTAATGTATCATGGGTCTGCCCCAGAAAGAAGTAGGTCCAGACCGATCCAGCTAAGGAGTGATACTGAGCAGATACATGGATAGCCAAATGAAGCAACGTGTCTTCACTGGGGTTGTGACCCAGCTCCAGGAGCATTATGGGATGGTGGACCAGGAAGTGCGTTTTCAGAAGAGtgtggtgAAGGGGAGAGTTCCGGCACTGGGGGAGAGGGTGCTGGTAAAGGCTGTCCTGGATCTGTCTCAATCACACAGCTGGAGCGCCCAGAGAGTACAGACCCTCGCAGAACACACACAGACGGCAAAGTTTCCTCGTCCTCTCCTGCCCTCCATGATGCCTGCACACGCACAGAAACCGGGCATTCTGGGTAGCAAGCCGCAGCCTCTCCTCAAATCTCCCAagatccctcctctcatccccagcATCCTTCACACTGTGGCCAAGCCGGGGTTGCTGCAGACTCCATCATGGGGGGGTCAGTTTGAGGGCTGGGGCAGAGGCATCAGGAAGAGACCTGCTGAGGCAGGGAGACGAGGAGACCGCcgGGAGGACAGCGGAGTGAGGGGTTGTGaccagaagaggaggaggtggaaggaagaggaggataagGGAGCACACCCCAAAAAGACCTCCCCTACCCCAGTTCAGAGTCCCGCCCTCTTCTCTTGCTTCCCCAGGGATTGTGTGTCCTGTGACAGTCTAGAGCTACAGCGTCGCtacccccatctccctctccccccatccGTCTGCCACCTGTCAATCAGTTGGATTGACAGCTTTCCTCCCTCCCAGCCCCTCCCCTTTCCGCTCCCACAGCCCTGCCGTTACCACATAGGCCCCGTCGAGCCTGaccaacacatacacactgagagagagggcGCAGAGTGCACTGTAAAGgTGCTGCTGTTGTCCATGGCCAGTTCAGAGGAGCTGTACAGACAGTGCTGTGGGCTGCAGGACCGGAAAGAACAGCAGGAGGGTGCTATGCACCCTGCCTCTCTCATTAAGtTCCTTTTGGGGGAGGTAGGGGGTGAGTTTCGGGCCCTTGGGGGTCCGTGGTGTCTTGAGACAGATGGCGGCGGTCCCAGTCCGCTGAAGGACCCTCGGGCACTGCTGAGGACAGCCCTGCGCTGTGTGAGGGAACAGAGTGGACTGGACCTCAGCGGCTGCTCCCAGTGGTATAAGATGGCTGAGCTGAGCTATGTTTGTGAGGGGAAGCTGGAGACAGTGGTGTTTTTGTTACCTGATGTCTGGCGGATCGTACCTACAGAGGACGACTGGAGCACACTCAGGACTCaggagGAGGAAGGggcccctctccctgccactccaTGCCTGGTTGCAAGGCCTCGTCCTGGGCTAGCCCTCTGCcccgtccccctctcctctctcctggagCCCCACACCTCCACAACCAAGGAGGCCTTTGAGgtgggcTTGCTGGCAGAGTTGTTTTGTGAGATGCTTCAGAGGGACTTTGGTCTACTGCTCTACCGCTGTCTCTGCTCTCTAacgcctacacacacacccacgGAGGATGACCAGATAAAGAACGACAAAAAGCAGAGAATAAGGGATGAGAGGAGTAAAAGATTtcaggaaagaggagagagtggagggacagCAGCGGAGGAGACTGATGACGATGGAGAAGAGATggatgagaaagagggagaaagagAGATGTTGGGAGAGGAGGGAATTACTAGTGAGAATTCAGACTGCCTCTTAAAGCACAATgtgCTGTCTCGTAGGGTGTTGTTGGCTTGTGTGTTCTTTGACAAACGGCTCACTGGCGGCCTCAGACAAGCAGACCTTCACAACATCTTACTGTCACTAGGGCTGTGGCTCACACCCACCCAAGTCCAGGTGTTGTTGAAtaaggtgtgtgtggaggggcaaTGCCCATACAGGATGCTAGCCTCTCGCTgggaggagacagaacacacagaaccTGATATCAGCATGgaagGTAACCGTGGGTTGTTTCGTGGAGCTACAAAGAAGGAGAAGGCTTGTGGCCGGAAGTCTGGGGGATCCAGGGGGCCAGCTGCAGCTGTGGGGGCTGAGGTGGTCTCCTACAAGGGCAGTGTGGTAAACATCCCCAGCCTGCTGCAGGCCCTGGAAGCAGCAGACAGAACACGGAAAGCCCTGGAGCTACGCATCGCCACCCTACAGGACGCACTGGTGGATGCTGCGGCTGTCACTCAGGGCCAGGAGGAGGGTCTTAGCAGCAGGCTGGAGAAGGTGGAACTTCGAAGCTCATCCTATGAGAAGAAGCTGAAGGAGGATGCTGGTCACATGTTCGCCCTCATCCACAAAATGCAGGAAATGGTCGACGAGACGACAAGCCTGACTCAATCAAAAACAGCAAATGAAGAACACTGATTGGTCGGAGCAGAACAGAGAAGTGAAGATAAACTTGAACGATTACattattacatacacacacacgcaccagccGGCTTGACGGGGATGAGTGAGTGACTACACACATATACAGTCATGATGGAAAGTATTGGCACACTTGATaaagatgagggaaaaaaactgtataaaaaaaaaatgatacaaTTACTGAGCTATAATGTATGCTCccaaatttttttaaattatatgattttatactaatacaactgctcaaagaaagagattttgtttttcTCAATAGATGGGGTcgaaattattggcacccctcttTTCAATACTCCGGCACCTTTGTGAGGATAACGGCATAGCCTTTTTCTctaatgttttatgagattggagaacacattgggaaggatgttagaccattcctccatacagaatctttccagattaTTGATATTCTTCGTCTGCGCtcatggactgccctcttcaattcaaaccacaggttcaATTGGATTCAAATTCGGAGACAGAGCTGGCTATTGCAAAATTTTgatttttgtggtcaattaaccatttctttgtagattttgatgtgtgcttggggttattgtcttgctggaagatccacttgcagctaagtttcagcctcctggcagaggcaaccaggtttttggctaaaatgtcctggtactgggtaaagtccatcatgccgttgaccttaacaagggccccaggaccagtggaaacCAAATAGCCCATAacacattttattattattttctgcATATGCAGATGCCAGACCCACCACTggcatttacatttgttggatatcatatttctccaatgccaaatcagtgtCTTGTTTGCAATGAGAGAGCATCGCGGACCATAGCACTGTTATAGATCACTTTATATAATCACATCAGTTTTTATTTATCTTCAAAAATAGATAGGAAGAAATACGAAGCCCTCTATAATGAATTATTCCTACTCTAATTTtcctactttcagcaccatgagctgtccatttccaATTGATTGTGCCGTggctgctgcttcaagtttcagcaccacaatgtaaaTGACTGAAATCTGGCTTAATGTGAGGTCAATAACTGATAAATACATCATTGGCAAGAAAAATGTTGTTTTTAATCAAATCTATTATAGTAGTAACAAGCTATTAAAGTTGACCTCCATCTTTGCCCTCTCCTCAAACTGAACAGAatataggctataggctagtcTGTGTGCAAGAGTGCATTTTCTGGActaggtcaaataaataaaaatctgaatAAGCCATTGACTCCTCCTGAACTGCTACGTTTTGGATGAGCAGAGCAGGCCGGGGTTGGAATatccattggttaggcagcacacaatAACGTTTTGgatgagcagagcagagcaggccggggttggaatatccattggttaggcagcacacaatAACGTTTTGgatgagcagagcagagcaggccgggGTTGGAatagccattggttaggcagcacacaatAACGTTTTGGATGAGCAGAGCAGGCCGGGGTTGGAATatccattggttaggcagcacacaatAACGTTTTGgatgagcagagcagagcaggccggggttggaatatccattggttaggcagcacacaatAACGTTTTGgatgagcagagcagagcaggccggggttggaatatccattggttaggcagcacacaatAACGTTTTGgatgagcagagcagagcaggccggggttggaatatccattggttaggcagcacacaatAACGTTTTGGATGAGCAGAGCAGGCCGGGGTTGGAatagccattggttaggcagcacacaatAACGTTTTGGATGAGCAGAGCAGGCCGGGGTTGGAatagccattggttaggcagcacacaacGTTTTGgatgagcagagcagagcaggccggggttggaatatccattggttaggcagcacacaatAACGTTTTGgatgagcagagcagagcaggccggggttggaatatccattggttaggcagcacacaatAACGTTTTGGATGAGCAGAGCAGGCCGGGGTTGGAatagccattggttaggcagcacacaatAACGTTTTGgatgagcagagcagagcaggccggggttggaatatccattggttaggcagcacacaatAACGTTTTGGATGAGCAGAGCAGGCCGGGGTTGGAatagccattggttaggcagcacacaatAACGTTTTGGATGAGCAGAGCAGGCCGgggttggaatatccattgcagtgtgtaatACAACCCAGTTTTATTTGCACCATCCCAGCAGCcatcttagaaatataactttgctctATGCTTCTCCGAGCAGGCACTTTGTATTCTATAGGccatggatcatttgattgaaccacactaaatagcctgcAAGCATACTTGATATTCCGCGCCCAGCAGAGAATCAGAGTTGAGGGGCAGCATTGGGCACACGGAAAATATTGACATTTCATCAATTACATGACTCTCCCCTggactagaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatacacacacacactaccgttcaagagtttggggtcactttgaaatttccttgtttttgaaagaaaagcaaaaaaaatttccaataaaataaaatagatcagaaatacagtgtagacattgttagtgtTGTAAATTACATTAATGACATTGTAAATTacattctaagtgaccccaaacttttgaccggtagtgtatatacaaaaCCCTCCTCCAGGTAACCATTCTGTAAATGTTTATCCATcctctactgtaaaatatggtggtggatctttgataaGCTCAACATGTCAAGGATCTGATTCTGTATTGGGGAAtcgtctaagatccctcccaatgtgttctctaaTCTAATAAAACATTtaggaaaatatgtattttatttcatgATGTTAATGTTACTGCAAACATTCTTCATTCAACAACTCTACTTCCATCTATCGTTGTGATTTGGCAGGAATAAACACGTTTGAATTTTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428741 lncRNA upstream 919 20921877 ~ 20922095 (+) True G377198
TU428740 lncRNA upstream 1656 20921135 ~ 20921358 (+) True G377197
TU428738 lncRNA upstream 5235 20917187 ~ 20917779 (+) True G377195
TU428729 lncRNA upstream 8481 20914152 ~ 20914533 (+) True G377186
TU428678 lncRNA upstream 71874 20849654 ~ 20851140 (+) True G377144
TU428731 lncRNA downstream 2486 20946529 ~ 20992976 (+) True G377188
TU428726 lncRNA downstream 49662 20993705 ~ 20996708 (+) True G377184
TU428787 lncRNA downstream 75619 21019662 ~ 21019907 (+) True G377240
TU428788 lncRNA downstream 78662 21022705 ~ 21023369 (+) True G377241
TU428790 lncRNA downstream 80921 21024964 ~ 21025268 (+) True G377243
XM_021602058.2 mRNA upstream 12377 20898121 ~ 20910637 (+) True LOC110523395
XM_036977024.1 mRNA upstream 25147 20881938 ~ 20897867 (+) True LOC110522818
XM_021601313.2 mRNA upstream 63252 20858342 ~ 20859762 (+) True pnx
XM_036977023.1 mRNA upstream 80338 20831111 ~ 20842676 (+) False LOC110522817
XM_036977022.1 mRNA upstream 163759 20646271 ~ 20759255 (+) False LOC110522816
XM_021602063.2 mRNA downstream 8106 20952149 ~ 20991341 (+) False LOC110523398
XM_021602064.2 mRNA downstream 8106 20952149 ~ 20991376 (+) False LOC110523398
XM_021602062.2 mRNA downstream 8107 20952150 ~ 20982403 (+) False LOC110523398
XM_021602065.2 mRNA downstream 8123 20952166 ~ 20982401 (+) True LOC110523398
XM_036977026.1 mRNA downstream 106893 21050936 ~ 21099289 (+) True LOC110522819
TU428679 other upstream 86455 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 164513 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 326151 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 939166 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2839649 18067443 ~ 18083365 (+) True arhgef28a
TU428818 other downstream 164126 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1228492 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 1228492 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1559709 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1658067 22602110 ~ 22629669 (+) True G378868

Expression Profile