RNA id: XM_021602184.2


Basic Information

Item Value
RNA id XM_021602184.2
length 8611
RNA type mRNA
GC content 0.52
exon number 29
gene id zmp:0000000846
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 24040145 ~ 24081954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGGGTCTGACCAGAATGCTTCTCTCTCAGTTTAAAAGGCCttttatcctcctctctctttctttcccactctctctctagctcggaTCCTCTGTAGGGTCTAGGTGAGGAGAGCAGGCGCCTGAGCTATCAGTGGCAGAGGGGCTTTTCGGAACAGAAGTGTCATCAGGTTCGAGCACAAGGAGAGAGGTTCCGGAACAGTCTTCAAAGTGGACATCCTTTCATTCCCCTTTATTTAATGTGCTGGGTTCCAACGAGGCAATTTGTGTGAGCTGGTGCTGAAGGCTGTGGTGGCGTAGCTCTAAACTGTCTGGTCTGCTAAAGGGCCCCTACACTGTTTTTCCAGATTTGGCCAGTCTTTGTCCCGATATTCCTAAAGCTGAGTCCAGTTAAGAGAGCCAAACATGAGTACTAAAAGCATTCTAGGCTGCCTCTTCCTGACTCTCCTTTTCAGCCTCTGCCAATCTGGGCTGGTGAGAAAAATACTTAGGCATAAACGGGCAACTCTGACAGCCACGGGAGGAGACAACATAACCCTCCCCAGTGCTGACCAGCCAGTGGTCTTCAACCATGTCTACAACATCAACGTCCCTGCTAGCTCCTTGTGCTCAGTGGACCTGGATGCGCCAGGAAGTACCAGCCTTGAGCCCCAGGACGCAGTTCCGCCATCAGGCCTCCACACCACCGAACATACCATGGATGGGCAGAACCAGATTGTTTTCACCCACCGCATTAACATTCCTCAGCAGGCGTGTGCATGCACCGAAGGGTTCCCGGATTTGAAGGACCTCCTGAGCAGGTTGGAGATTCTGGAGGGAGAGCTGTCCACGCTGAGAGATCAGTGCACTACTGGAGACTCTGGCTTCTGCAGCGCTCAGCCAGtcacagGTGAAGTGGGGACCAAGCCTTACTGCAATGGCCGTGGCAACTACAGTGCTGACACCTGTGGCTGTATTTGCAAGCCTGGCTGGAAGGGACCCAACTGCACTGAGTCTGAATGCCCCAATGACTGCCAGGACCAAGGTCGATGCATAGACGGGAAATGTATCTGCTTCGAGGGCTTTGGCGGGAACGACTGTTTGCTTGAGGTTTGCAAAGTGGACTGTGGTGAGAACGGACAATGCACTGGCGGGGTCTGCATCTGTGCCGAGGGTTTCATTGGAGAGGACTGTTCTCAGACGGACTGCCTGAACAACTGCCTAGGCCGTGGAAAGTGTGTagatgaggagtgtgtgtgtgaagagccCTGGACGGGTTCTGACTGCTCGGAACTCATCTGCCCCAACGACTGCTATGACCGTGGACACTGCGTCAATGGAACCTGCTACTGCGAAGAAGGTTTCACCGGGGAGGACTGTGGGGAGGCAACCTGCCCCAGCGACTGCATGAGTCATGGTTTCTGTGTGAACGGCCAGTGTGTCTGCAGCGCTGGCTACACCGGAGAGGACTGCTCCAAGCTCACCTGCCCCAGTGATTGCAACGATAGAGGTACCTGCTTCAATGGCATGTGTATCTGCGATGCTGGCTACCAAGGAGAAGACTGTAGTCAGCTGGCTTGCCTCAACAACTGCCATAACAGGGGGCAGTGTGTCAATGGGCAGTGCCACTGCGACGTAGGCTACCAGGGAGAGGACTGCTCTGAGCTCTCCTGCCCCAATAACTGCCTCAACCGGGGCCGCTGTGTCAACGGGCAGTGTGTATGCGATGAAGGCTTTGGTGGAGAGGACTGCAGTATTAAAACCTGCCCCTCGGACTGCTATGGCCGTGGAGACTGTGTGGACGGCCATTGTGTCTGCTATGCTGGCTTCACTGGTGAGGACTGCAGCGAGCTGAGCTGCCCCAACAACTGCCTGAACCGCGGACGCTGCGTTGACGGGCAGTGTGTCTGTGATGAGGGCCTCACAGGGGAAGACTGCAGTGAGAAGCGCTGTCCCAATGACTGCCTGGGCCAGGGATACTGTGTGGATGGAAAATGTGTCTGCCAGGACAGCTATGTGGGTGACGACTGCTCTGGACTCACCTGCCCTGATAACTGCAATAACAGGGGGCTCTGTGTTAATGGGAAATGCATTTGTGAGGAGGGATACGTGGGAGACAACTGCGGAGAGCTGAGCTGCCTCAACAACTGCCAGGACAAAGGCCGCTGTGTGAATGGACAATGTCTCTGTGAAGAGGGATACATCGGAGAAGACTGCTCAGAAGTTTCACCTCCAAAGGGCCTGACCGTAACAGAGGTCACCACTGAGACAGTGGATCTGACCTGGAATAATGAGATGCTGGTGACAGAGTATCTGATCACTTACGTGCCAAATGGTCCTGGGGGTCTGTATCAGGAGTTCACAGTGGGCGGAGACAAGACTGCTGCCACTGTCAGCGAGCTGGAGCCTGGCATCGAGTACCTGATCAACGTCTATGCCATCCTCAGCAACAAAAAGAGCATCCCAATCAGCGCCAGGGTGGCCACATATCTGCCAGAACCAGAAGGCTTGAAGTTTAAATCGGTGAGGGAGACCTCAGTAGAGGTGCTGTGGGATCAGCTGGACATTCCTTTTGATGCCTGGGAGCTCTACATCCGCAACACGAAAGAGGAGAGTGGGAAAACCCTTACCACCCTTCCATCCTCCCAGACCTTGTATGAGCAGACGGGGCTAGGTCCTGGTCAGGAGTACGAGGTTTCAGTGGGCGTCATCAAGAACAATACCAGGGGACCTCAGTCTACTAAAATCATCACTACCAGGATTGATGGGCCCAGGCAGGTAGAGATGCGTGATGTGACAGACAGCTCAGGCTTGGTCACCTGGTTCCATCCCGTGGCTCAGGTGGATGGTGTCACCGTGTCCTATGGCCCCAGTTCCGACCCCACAGAGAGGACCAGCGTGGACCTGTCCACCTCAGACAAACAGTACAGCATTGACAGCCTCAGCCCAGACACTGAGTACCAGGTGTCCCTGGTCTCCAggaggggaaacagcaccagcgATCCAGTCACTGAGATATTCACCACAGACCTGGACGCTCCTAAGGACCTGCAGCCACTGGGCCAGACAGACAACAGCGTCACACTGGAGTGGAGAAACAGCCGGGCAGACGTTGACAGCTACAGGGTGAAGTACAGCCCTATCTCTGGGGGTTCCCATGGCGAAGAGGTGTTCCCCCGTGGGTCAGGAGGCAACACTCAGGCAACTATCACTGGATTGAAGCCGGGTACAGAGTACGGAATTGGTGTGACCGCCAtgaagaatgagagggagagccTGCCTGCCACCACAAATGCAGCAACCAACTTTGATGGGCCCAAGGACTTGGAAGTGAGCGAGTCCACAGAGACCAGCATGACGCTGGTGTGGAAGAGACCCCGAGCCAAGATCCCCATCTACAGGCTGGTGTACATCTCCAAGGATGGccggagggaggaggtggaggtccCTGGAACAGCCACCTCCTACAACCTAAACAACCTGACCCCCGGCATGATGTACACCATCACCCTGGTTGCTGAGAGGGGCTCAAAGAAGAGCACACCTGCCACCCTGTCCGCATCTACAGCCTCTTTCACGTTTTACATAGCCAACCCTGCCCCTGAGCTTACCACTCCCATAGGCTCGGAGGACAATATCATTAGTTTTGTGTCGTTAGACCCCTCTGACCCAGACCTACAGATCTCAGGGATGGGGCTTGAGCTCGAGGATAAGCTGGGAGAGCTGACTGTCTCAGTTGTAACGTCCGAAGGATTTGAACTTTCGTGGGAACCAAAGGCACATGTTGTCTATGATAGTTATATTTTAGAATGTAGAGACACTCTGGGATTATGGGATGTAAAAGAGGTCCATCTCCATGGAGATGCCAAAGGTTCTAGATTTCAAGGCCTGAGGGAATCCACAGAATATCGAGTAAAGCTTTACGGAGTAAGCAATAGCCAAAGATCCTCTCCGCTTGAAGCAGTCACAGTTACAGCACCCAAGTCTACCTCTACTGATGTAGTCGCTCTGAGTGTCAAAAGTGCTCAGACGACACAGTCTCCTGACACAGGAGCTGTTCATCCAACAGTCCTTCCCCTGGCTCCTCTGATCACAGAGGGGCCTACATctacatctctgtaccccacggGGGACATCCCCTCTGGGGCTGAATCTGAACCAGAGGGCTCCAGCCTGGAGACGCTAGGGGACCTCAATGTCACAGACGTGAGCCCCACTAGCGTGAGGCTAGCCTGGTCAGCCCCAGATGAAGCCTTTGATAGCTTTTTGGTGGAGGTGAATGCTCTGTCAGGGATGGCACAAGCTCATGTGACCACGGTACCAGGAAGCGCCAGGAAGACCCTTGTAGAAGGCTTGTCCCCTGGGACACGTTATGAGGTTTCGTTGTATGGGAAGGTGGAGGGGGAGCAGTCTCTGCCTCTTCATGCTTTTGCCAATACAGAGGAGCTGAGGCCTGTGGTGGCCAACCTCACAGTCTCTGACGTGACATGGGACAGCTTCAATGTGTACTGGACTCCCGAGGACGGGGAGTTTGAGAGCTTTGTCATTGAGGTGACAAACTTAGAGGGAGGTCCAGAGAGTGAGAACCTCACCCTGTCGGCTGATGCCTTCAACCTGGGCATTTCTGGCCTGAGTCCTAACACTTTGTATAGGATTGGCCTGTACGGGCTCCACCAGGGCTCCTTCCAGGAGCCGGTGTATACTGAAGCCACTACAGTGAGCGAGCCAGTGGTTGGCAATCTGTATGTATCTAATTTAACGTCAGAGAGTTTCTCCATCTCCTGGAATGGCACTGAGGGAGAGTTTGACGGTTATGTCCTGGAGATTATTGATTCAGATTGGCTGAAGGAGCCAAAGGAATATAACATATCCCAGAATGCAATGTCTCATGACATCACAGGGCTAAGGCCCAGCACTGACTATATAGCCTACCTCACTGGGATTGTCAAGGGATCACGAACCCATGCCGTCAGTATTATTGCATCAACAGCTGCAGAGCCTGACTTGTCCAGGCTAGTTGTTTCTAACGTTACCTCAGACAGACTTTCACTGTcatggaggaggggggagaaggctTTTGATAACTTTATAGTAGAAGTCAGAGAGTCTGCTTTGCCCTCGCAGGCCATGGGCCGCACCCTGCCTGGAGCGGCTCGCGCCACAGTTATGACTGGCCTCAAAGGGAGTACAACCTACGACATCAAACTGTACGCTAGCTCCGCTGGACAGAATACACAGCCCCTATTCGCTGTAGTCACCACAGAGGCAGTCCCACAGTTGGGCTCAATAGCTGTGTCCGAATCTAGCCCCGATAACTTCACCCTGTCCTGGGGCACAGTGGCTGGTTACTTTGATGGCTTTGTCATCCGGGTCGGTGACCCTGAACAACTGTTTGATACACTGGAGTTCACGCCGTCTGGCGAGGTCCGTAACATTACAGTCACTGGCCTAGTGGACGCCACTGACTATGACATTGAACTGTACGGTATTTCTCATGGGCGCCGCACCCCTTCCGTTTTAGCCCATGCCGTCACAGCATCATTACCCAAAGTGGAAAACTTGACCATTTCTGAGATCACCCCATTCGGCTTCCGCGTGTCCTGGAGGGCGCATCATCCTCAACAACAGGAAGGGGCTCCCTCTACTGGTGGCTTCGGCCACTTTCACATAGTGGTGTCAGACTCAGGCTGGCTACTGGAACCTCAGGAGTTCATTGTCCCTGGCAACCAGAGCTTCTTGGACATCTGGGGCCTGATCACTGGCATAGGCTATGAGGTCAGGCTGACTGGGGTATCCAGTACTGGGCTGGTCTCCCGCCCACTGACCACAGTGGCTGTGACAGAGGCTGAGCCAGAAGTGGAGCACATGTTTGTCTCGGACATCACTTCAGACAGTTTCCGCCTGGCCTGGACCGCAGATGAAGACATGTTTGATAGATTTGTGATCAAAATTAAGGACTCCACAAAGTTTGCGCATCCACAAGAAGTCAACGTCCTTGGTGACGAGCGAACCAAGATTTTAACGGGACTCACCGGCGGCACCGAGTACGAAATCGAGCTGTACGGTGTCACTTTGGAACAGCGCTCCCAACCAATTACCGGTGTTGCTCGAACAGGCCTGGGCGCTCCAAGAGGCATCCGCTTCTCTGAAGTGACTGAGTCCTCGGCCATAGTACATTGGATCATGCCTCGTGCCAGAGTGGATAACTACCGCATCATCTATGTGCCTCTCCAAGGAGGCAGCCCAATGACAGTGCTAGCAGATGGGACTGAGACCCAGGCCATGTTGCCTAACATGTTGCCAGGAGTGACCTATCAGGTCACCATCTTTGCTGGGAAGGGCCTGGAGGAGAGTGACCCGGGGACAGAGAACATCACCACAGCTCTGGACAGGCCTCAAGCTCTTTCTGCTGTCAACGTCACTGACACAACCGCCCTGCTGCTATGGCAACCAGCTCAGGCCACTGTCGATGGCTACGTCATCACCTACAGCACAGATtcagTGTCCCCAGTGATGGAGCACGTTTCTGGGAACACGGTGGAGTTTGAGATGGGCTCCCTGGTCCCTGCCACACACTACACAGTAGGGGTGTACGCCATGAGGGAGGCACAGAAGAGTGGCACCATCACCACTGAATTCACAACGGATGTGGATTCTCCTCGTGACCTGGCGGCCACTAATGTCCAGACAGACGGTGCCACTCTCACCTGGAAGCCTCCGCGTGCCGCCATCACCGGATACATTCTCACCTTCACCTCACCCGACGGCACAGTCCGGgAAGTTGTCCTGAGCCCGACAGCCACATCGTACAGCATGAGTGAGCTGAGTGGCTCTTCAGAGTACAGCGTCAGGCTACAGGCCATCGCTGGAGCCCAGCGGAGCCGCCACGTCACCAATGTCTTCACCACCAttggagGATTATACAGATACCCTAAGGACTGCTCGCAGGCTCTGCTAAATGGAGACACGATCTCTGGCACCTACAACATCTACCTGGGAGGGGACGAGAGCCAGCCCATCCAGGTCTACTGTGACATGACCACGGACGGAGGAGGATGGAtgGTGATCCTGAGGCGCCAGAATGGAAATCTGGAGTTCTTCAGGAACTGGAAGAATTACACCGGTGGCTTTGGGGACATGAATGATGAATTCTGGTTTGGTCTGGCCAACCTCCACAAGATGACGGCATCAGGCCAGTACGAGCTGCGTGTGGACCTGAGGGACAACGGGAAGTCGGTCTACGCTCAGTATGACAAGTTCACCATCGCAGAGCCACGTAGCCGCTACAAGATATACTTAGGAAAATATAGCGGCACAGCAGGTGACTCTATGACCTATCACCATGGTCGGCCCTTCTCCACGTACGACAATGACAACGACATTGCAGTAACCAACTGTGCACTGTCCTATAAGGGTGCCTTCTGGTACAAGAACTGCCATCGTGTCAACCTCATGGGAAAATATGGTGACAATAGTCACAGCAAGGGTATCAACTGGTTCCACTGGAAGGGACACGAGCATTCAATCCAGTTCGTCGAGATGAAGATTAGACCCGTCAACTTCAGAAACGTTGAAAGCCGACGGAAAAGATCATAGACTTAATACCTGTACATGGTTATATTGTGAAGATATGTGGTGGAGGGTTTGGAATGGTCAGAATAGGCACTTTTGTGTGTTTGATTTGTTTTATTCTTTGCGTTCATTGGAGAACGCTCAAGCCAAATATGGCTCCTTATATTATGTCCAAAGATATTTGAATATGCCAATTAAGAATAAGGCAGTTTGATTATGAAATGTGAAACAATGAATGGAGATTTCGGTTACACTTATTTTTATGGTGAGGGTAAAAAGAGTCCTACTGTAAGTTTCACTCTCGCTCTTCTGTTCTATTCTCCCACACTGTTACGTTCTCTTTCTGGCTGTTGATTAAAAAAACTGTATGAGCACCGTTAAGCTTTTCAACTAGGCACATGGAAATAATAACGTGGCTTTATGCCACACCCCTCAGTCTCCCCAGACGTTGAGGGACGGGGAAATAAAGCTATCGAggttaaaggaaaattccactcaaaaatgatatttttgtccactgttgatacagtcctacaatgttttgcatgtcagcagatACGTTTTCAAGATActggactttcaagaagcaaagtgtcacttgCCACATCAGCATAATGATGTAAAACGCATCATATGATGATGATGTGACAAATGACACTTTGCCTCTTGAAAGTCCAATGTCTTGGAACCTTGCCTGCTGacctgcaaaacattttgggactggaTCAAAGGGGGAtgaatgaaaaaaatacaaataaaattgtttcCTTGTACAGACCTGAGGGCAGGACTGACTAAACTGGGTATCATTTGTTTCATATTGAGTGATtgatatttcaaatgtcattttatATTATTTAAACCTATTGGAGTTCATTAACAGTATGTCCACAAATACAACAAAGCAGGACAACTATTCTTGAGAAGATTATGGTAGTGATTTTAACCACTGACATCATTGAATACCGGTTTAAATTATGCCTGACATTTTTTTTCAACTGAATAAAAAACAGACGTCTATATGAAACCCTCAATACAATAAAATATACTTTGTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432502 lncRNA upstream 9774 24030133 ~ 24030373 (+) True G380482
TU432501 lncRNA upstream 10571 24028976 ~ 24029576 (+) True G380481
TU432497 lncRNA upstream 15889 24023593 ~ 24024258 (+) True G380477
TU432481 lncRNA upstream 47867 23992079 ~ 23992280 (+) True G380461
TU432477 lncRNA upstream 57474 23982451 ~ 23982673 (+) True G380457
TU432544 lncRNA downstream 38913 24120867 ~ 24121726 (+) False G380524
TU432545 lncRNA downstream 39450 24121404 ~ 24121726 (+) True G380524
TU432958 lncRNA downstream 132832 24214786 ~ 24215037 (+) True G380905
TU432983 lncRNA downstream 148198 24230152 ~ 24230422 (+) True G380930
TU432999 lncRNA downstream 159651 24241605 ~ 24241809 (+) True G380946
XM_021602183.2 mRNA upstream 110482 23906231 ~ 23929665 (+) True LOC110523473
XM_021602182.2 mRNA upstream 134146 23896074 ~ 23906001 (+) False LOC110523472
XM_021602181.2 mRNA upstream 134146 23896075 ~ 23906001 (+) True LOC110523472
XM_021601275.2 mRNA upstream 156806 23873604 ~ 23883341 (+) False oclna
XM_021602200.2 mRNA downstream 372118 24454072 ~ 24473605 (+) False LOC110523479
XM_036977107.1 mRNA downstream 372699 24454653 ~ 24473605 (+) False LOC110523479
XM_021602201.2 mRNA downstream 372700 24454654 ~ 24473605 (+) False LOC110523479
XM_021602216.2 mRNA downstream 553749 24635703 ~ 24644012 (+) True LOC110523483
trnaa-ugc-9 mRNA downstream 622761 24704715 ~ 24704786 (+) True trnaa-ugc-9
TU432381 other upstream 195802 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 196301 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 196436 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other upstream 197431 23838524 ~ 23842716 (+) False LOC110523468
TU432349 other upstream 298688 23740434 ~ 23741459 (+) True G380340
TU433317 other downstream 605785 24687739 ~ 24776429 (+) True G381239
TU434321 other downstream 1143488 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 2092991 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 2355665 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 2355705 26437659 ~ 26460535 (+) True LOC110522865

Expression Profile