RNA id: XM_021602183.2


Basic Information

Item Value
RNA id XM_021602183.2
length 5827
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC110523473
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23906231 ~ 23929665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCAACACTGGTCCACTACTTTGAGTAAGATTTGCATTCAGGTAAAACAGAGCATGAATTTGAGTGCCCCATTCAGCCTCGTACCACAGAACAGACTGCTCTTTCGGTGCGTTTTGCCATTGTCAGGTGAATTAATGATTTGCATTCACTTTGAGTGTTCATCATACATAAAGATTACACTGTTGATATATTTGTCATGCTTTTCACATCTGAACATAATATCTGCATTTTATTCTAATGAATGAGAGAGGGAAGTTGTTATTTTGCTAATAGTGGCAGCTACTAGTCTATTATAGATCCTCAATTGATGTCTTGTCAATCATTATAAACTCACCTATTCGGAGGTATGCTGTAAACATGAAAATTATGATGAAACTAAATTATGCACAACTAACCTATATAATTTGTCCAAGTGCCTATATTTTCATTATTTTAAATGTAGTCATATGAAACCATTAGCAATGGAATATCGTTAGGAGGCACCCCCTTTACATTTGGCCTGTCTGTCAACCCATGTTAAGGCTGCACATGACGTAACACCCACACTGCAAAGTGCAATGGCGAAATTTAACAATAACAGCCATCGCTTCTCGGTACCATATGTATTATGTCGTTAACATTAAAGAAAACAGAACCATTCTCCCGGAGAGTCACAACATGCAACATCTGTAAATTTAACGCGCGCGGGGCTGCGACTAGGAGTATTCTACTGTCTCTGCAAGCGATGACAGTTTAAAACGCGGGTCTTAGGCGTACTGAGGGAATCATGGCCACGGAAGAACCATCCCCTCCGTCGTCCATGGAGAGCAACAAACCCGGCTTCCCCAAACAGATCCTGGCCAACAAGCTGGAAGATAAACACCTGTGTAACTGCTGTCAGAAGCTGCTGCGGAGGCCCTTCCAAGCCCAGTGTGGACACCGCTTCTGTTCCTACTGCTTCAATAGGACTGTCAGAGATGGACCTCAGAAATGCAGTGCTTGTATCAAAGAGGACATTTTTGAAGAGCCCACGTCGATTCTAAAACAAGGCTGTGCTTTTCCTGACAACGCAGCTCGACGAGAGGTCGAAAACCTCTCTGTTGTCTGCATCAACGAAGGCTGTACCTGGAAAGGCAATATTAAAGAATATGAGTTGAGCCACGAGGGGAAGTGTGACTACATGATCATCCCCTGCCCCTCCTGTAAAGAGCAGATCCGCTTCAACGAACAGGAACGCCACAATGAGCGAGAGTGCCCTGAGAGAACTCTCAACTGCAAGTTCTGCAAGGAACCATTCCATTTCAAAAACATCAAGGCCCACGACGAGATCTGCCCCAAGTACCCCATGATCTGTGAAGGCTGTGCCAAGAAGAAAATACCCAGGGAGAAGTACGTGGACCACATTAAGTTCTGCAGCAAATTCAGAACTCCATGCAGATTCCATGTTGTTGGGTGTGATATGTCAgtggagaaggagaggatccATGACCACGAGAGGGCCTGCGCCTATGAGCACCTCAACTTGCTGCTGCACTACATTATGGGGATGAAGGTGAGCATGGAGGGCCTGCAGCCGCAAGGCCTGGAGCTGGCTGGACACAAGCTCCTGGAGCTCCACCATTCCCTCAGGGAGCTGGAGGCACGCGTCTCCCAGCTCAGCACTAACTCCACCGGGCCTCCCGTGCAGGGGGCCACCAACTCTTCTTCCTCCCCGGGCCTCTCCGGGCCTCCCACCCTAGCTCTTCCCCTGCCTCCACCTCCCGCCCTGGCCCCCACCCTGACTGTGTCCACCTCCTTCACCCCCTTGCCCAGCTCGGTGGGGGCGGCCCTGGAGCTACAGCTCCACAGTGAGAAGACCAAGGTGGCGGAGCTGGGACGCAGGTGCACCGACCTGGAGGTGAAGGCGGGGATGTTTGAGAATGTGGTTTGTGTGTTGAACCGAGAGGTGGAGCGCTTTGCCACAACCATGGAGGCCAGTAACAGACAGCATCGCCTAGACCAGGATAAGATTGAGGTCCTGAGCAACAAGgtgCGGCAGCTGGAGAGGACGGTGGGTCTGAAAGACCTGACGGTAGCAGAGATGGAAGGCAGGCTGAGGGAGATATCGGGCACCACATTCGACGGCGTCTTCATCTGGAGGATCTCTGACTTTACCAAAAAAAGACAGGATGCCATTGCTGGCCGAGCTCCTGCCATGTTCTCACCAGCCTTCTACACCAGTAAATACGGCTATAAGATGTGTCTGCGGATCTACCTGAACGGGGACGGGACAGGGCGTGGCAGCCACCTGTCTCTGTTCTTTGTGGTGATGAGGGGACTGAGTGATGCTCTGCTCAAATGGCCCTTCAACCAGAAGgtGACTCTGATGCTGCTGGACCAGAGTAACAGGGAGCACATCATCGATGCCTTCCGGCCCGACGTCACTTCCTCCTCCTTCCAGAGGCCTGTAAGTGAGATGAACATCGCCAGCGGCTGCCCGCTCTTCTGCCCGCTCTCCAAGCTCGACGCCAAGAACTCCTACATCCGCGACGACACCATTTTCATTAAGGCCATCGTGGATCTCACAGGCCTCTAGGATGCACCCTTTGAAGTGGAAGTGCAAGACAACCGAGCAGCAATGTGGCCATTCAGGCTTAATTTTGGCTGCTTTTGAGCACCATTTCGGCTCCATTTTGGTTCCGTTCGGGCCTATTTCAGTCCCCTTCATTAGTAGGGAGACTGACATGCTTGCTACCGTGTGCTGCACGTGGCTCCAGTTTGCCCAGCACAGGAGGCCCTTGCACTGTTGTAGCTCTACCATCTCTTAATGCCACAATACTGGTTCCTCATGGTGCTTGAACCCCAGTTGGTGTGTAGCTTTATTATTTGTTTCCATGGAAATAACTCCAGAATATAGTCTCAATATTTAGTAGGACAGAACCTGTGGTATTTAAATGGGGATATGTGGCAATTGAATTGATTTGGAGGGCATCTTTTTCTCTTTGTTTTTCATAAGACTTCATTAGGTCTCAGAGAGAGTGAATTGTAGCCGTTAGAGAATAGCAAAAAGAGGGATATGAACCTTTTCCTTGTCAGTGTAGAAAACTGCCCCACTGCTTATCGCAGAAGTAGAGCTTATCGTGGCTTGGTGCAGCAGGGTATTCACTTTATCTCTTGTTTCCGATCTCAACCGAGTCATTTTGATTGTGGATATCGTGAGCTTCTCAATGCCATTGTTGAGTACATTTGCATAGACAAACGTGGAGTTATGTTATGAATAAGAATATGGGCATTTGTTTGCCTTTTTGCGCAAATTGCATGCGGGCTATCTTTTATTGGCCTTGGTGTTGAAGTGCTCGCTCTTTTCATTGGGCTGCTGAAGGGATCCTTCCTTGTTCGTTATTACACCTGTGAGTGAGTTAAACCATCTGTGATGGTGGACATTGCCTGCATGTCTTGGATCCAGGCATATACTTTTACATATACTTGTTGGTGTTGCGTTTCTTGTTCCTCTTTAGGGGTTGAGGCTTATGGGATTGGTGGTTCGGTACATCTGTGGAAGATACAGTGGAGTTATCAGGGTGTTATAAGGCAGCTTGCCAATCAAAGCCTGAGGCATACAAGTGTATTTCTATCACTGGTAAATACATCAAGCTGGAAGAGCTTTCCCCTCCAGGATATGCTCATTACAGTAGCTCATATATCAACACATAGTACTGTGCCCCACCACAGATGTTAATACAGGTTCCATGAACTGAAGGaatggtgtgttccttgttttcTGTTCATATTACAGTGTGGTACATTTGTATGTAGTTTTGCTGCTATGTCAGATATGTTGGTGATGTAAAACAAATGTGTTGCGATCAATGCGAAATTTAGCACAGACAGTTGAAGGTGTAAAGTGGAAGGATAAAGAGAGATGTAaccacaaagtgaaaacaagtgaATGTGATGGTATACTTTGCCATTGGACCATAGTGGTTGATCATCGTTAATTGATGTTTGATGTAACTCTAGATAAATCCAATTAACCTGTGGGTGACAGTGAAACCTCTTAGCCTAGGTGGTAGTATTATGATTCATGAAGCCCCACAAATGACATTGACCAAAATGCTAAATCTGAGGAAATTCTTTAGATCTGAAATATATCTGTAGGTTGTATGCTTGTCCATTAGGGGGTGCTGTTTTACTTGGTATGCCTGTGTGCGTCCCCAATAGTCTTCCCCCTCTGGACTTGTGTAGGGGTTTTCACCTGCCTGTTTTGAAACCAGTCTTGAcctgttttgaaacctctctgtgcaTGGGAGGGTTCAATTCATATTCAGTATCGCAGTTCGTGGTTGGCTTACCTCGTAGACCAATGGCGAATGCATTTATTTGCATTTATTTGGAGGAGTATAAATAAAGATGTTAGAGTTATTATTATGCcatatctcgcacagcttctgtTCAACACAAGCAgatgcctatatatatatatatatatatatatatatattcataagAATTTATAAATATAATATCATAATGTTGAACAATTCAATATATTGATGTTACTATACCCATATTGTTATTAataaatatagtatagtatattattaaTTATATAAATAATACCTACTTTTTGTTTGTCGAGGTGGTTTAAGACAAGTCTGGAAAACCCCTTAAAGTAACCCAAATACATAAAATGCTGTGCCACATAATACCAACCATGGCACCCCATTCTCCTGGGTTAACTGAGGGTTAAAAACCAAAATATGAAGTGGTTGTGTTTACATTCCCCAAAATGACCCTTTAAAGGTTCCCACAGTAATTCTGTGTCATATAACTGTGCTTCTCAACCTTTTCTGTACCACTGGGGCCGAAAAACAATGGTCCCTCTTGTACCAAGAACCGTCAAGTTGCTATGGTCCTTCCTCCTCGAAGGACTCCTTAGGCCTATATCAAAACAGCACTTGAGATCTGGCTACATTATTGTCAGCTAACCATCTGATGGACCAGTCAGCAGCATCCCTGGGACTGGGGCCAATCCACAGGCCAGAGGTTGAGGACCACTGATTTTTTTGTCTTCTGAGAAAGGGTGCGTTGGTTGTTATTATAGGTAGTATTTGCGCTCTGAACATCATATTTGTGCAGTCAGTGAATATGGTGTTTGGTCCTTTGATGGTTATAGACGGGGTTTGGTTCTGCAGGAGTTGATTCTGACTATGTTCATTATAGGGCAGAGGTAGCTTTTTTAGCATCAAACTGGAGAAGTTGTTCAGTCAGTTTACAGCCCTCAACGAAAAGGAATTCATATATATTCTTTCCTTTCCATAAATACTTATTCTTGTGTTGTGCCAGAATGTTATATTACCTCCAAATTATTGCAAAAGCTGTGTTATACATTGTACTTGTATTCTATGCTAAAAAATGGTGCCAAATATGCTTAGAGAAATAGATATTATGTACATATGAAGGTTTAtggtttgtatttttgtttcattccAATGTAATGCATGGGTCACttttggaaccacctagactgATGGAGTACTTTCAGCAAAATATCTCCTCATAATCCAATAATATACCTTTCTTTAGGTCTCTGAATGTAAAGCTTTAATGCAGTGGTCCTTTACTCTTTCTGGGAGAGAAAACCAGTTCTGTTTTAACAGTTGTTGATACAGTTGAATTTAATGAACTTTAATTGTGCACTTTGTATTATTTAAATGTTAAACAGGGTACTACTTTGTTCTGTGATTTGTATACTGTGAAGTCAGAGCTATATACATTCTGATTTGTTGATCATGTATGTTCTCTATACGCTGTAAAGGCTGTAACAGGACATGTAGTATGCAATAAATTTGTCATTGGATTCCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432387 lncRNA upstream 98295 23807214 ~ 23807936 (+) True G380372
TU432345 lncRNA upstream 140387 23763779 ~ 23765844 (+) True G380336
TU432374 lncRNA upstream 142708 23763303 ~ 23763523 (+) True G380365
TU432372 lncRNA upstream 143823 23762021 ~ 23762408 (+) True G380363
TU432366 lncRNA upstream 152754 23753221 ~ 23753477 (+) True G380357
TU432451 lncRNA downstream 18928 23948593 ~ 23948796 (+) True G380431
TU432453 lncRNA downstream 23394 23953059 ~ 23953354 (+) True G380433
TU432454 lncRNA downstream 24557 23954222 ~ 23982341 (+) True G380434
TU432477 lncRNA downstream 52786 23982451 ~ 23982673 (+) True G380457
TU432481 lncRNA downstream 62414 23992079 ~ 23992280 (+) True G380461
XM_021602182.2 mRNA upstream 230 23896074 ~ 23906001 (+) False LOC110523472
XM_021602181.2 mRNA upstream 230 23896075 ~ 23906001 (+) True LOC110523472
XM_021601275.2 mRNA upstream 22890 23873604 ~ 23883341 (+) False oclna
NM_001190446.1 mRNA upstream 24047 23874558 ~ 23882184 (+) True oclna
XM_036977099.1 mRNA upstream 33454 23861151 ~ 23872777 (+) False marveld2a
XM_036977100.1 mRNA downstream 110480 24040145 ~ 24075381 (+) False zmp:0000000846
XM_021602184.2 mRNA downstream 110482 24040147 ~ 24081954 (+) False zmp:0000000846
XM_021602185.2 mRNA downstream 110483 24040148 ~ 24081954 (+) False zmp:0000000846
XM_021602186.2 mRNA downstream 110483 24040148 ~ 24081954 (+) False zmp:0000000846
XM_021602187.2 mRNA downstream 110483 24040148 ~ 24081954 (+) False zmp:0000000846
TU432381 other upstream 61886 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 62385 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 62520 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other upstream 63515 23838524 ~ 23842716 (+) False LOC110523468
TU432349 other upstream 164772 23740434 ~ 23741459 (+) True G380340
TU433317 other downstream 758074 24687739 ~ 24776429 (+) True G381239
TU434321 other downstream 1295777 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 2245280 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 2507954 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 2507994 26437659 ~ 26460535 (+) True LOC110522865

Expression Profile