RNA id: NM_001190446.1


Basic Information

Item Value
RNA id NM_001190446.1
length 1500
RNA type mRNA
GC content 0.55
exon number 8
gene id oclna
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23873604 ~ 23883341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCTTCCAAGCACAACGGGAGTCCGCCTCCCTATGAGTCAGATGGATATCATGAGCCACCCCAGCCGGCGTACTCCTACTACCCCGACGATGAGTTCCAGCACTTCTACAAATGGACGTCTCCCCCGGGCATCATCAAGCTGATGGCCATCATCATCATTGTCCTCTGTGTGGCCATATTTGCCTGTGTGGCCTCTACGCTGGCCTGGGACAGCCAGGGGGCCATGTCTGGCTTCGGTGGTTACGGGGGCAGCTCGTATGGGGGCAGCTCGTACGGAGGCGGTGGTTACTCCGGTAGCTTTGGTGGTGCTGCCTATGGTGCCGGTAACAACTATGGCTACGGCGGACTCGGAGGGAACTACAATGACCCTCGCACTGGCAAAGGATTCATCATTGCCATGGCAGCATTCAGCTTCATCACGGCCCTTGTCATTTTCATCATCGTGGTGTCGAGGCATGGCCTGTCGGAGTCTAGAAGGTTCTACCTAGCTGTGGTGATCATCTGTGCTATCCTGGCCCTGCTGATGCTCATAGCGACTATAGTGTACCTGGTGGCGGTGAACCCCATGGCTCAATCTACAGGGTCGATCTATGGGAGCCAGCTGGCAGGCCTGTGTGCCCAGTACCAGGGCCCCCAGGTTTCAGGAATGTTGGTCAACCAGTATCTCTACCATTACTGTGTGGTGGAGCCTCAGGAGGCCATAGCGATAGTGTTTGGCTTCCTGGTGATGGCGGCTCTGATCATCATGATGGTGTTTGCCTTAAAGACGCGCCAGAAAATCAGGAATTATGGCAAGTCCAACGTCCTGTGGAGGAAGGTGAAGATCATCAACGAGGAGGCCCCGCCCCAGGACGTGGAGGCATGGGTGAACAATGTGTCAGGTTTTCCTGATGAAGGTGTGGTGCTGACCGACTACCCAGAGAAGTTTGGAGGATCCAGGAGTCACCTGGACGACACCAGCACCAACTACGACAAACCTCCCTACAATGACAGCCCAGCTCCTCCAGTAGTTTGTGACTTCCCTGTGCACAGTAGTGCCCCCTACAGCAGTGGCTCAGAGATGGCCAGCTCAGCAGCAGGGAAGCCCAAGAAGAGACGGGCCGGTCGTCCTCGCCGTACTGATGGACAGGATACAGACTACGCTTCCTCTGGGGACGAGCTGGATGACGACAATGACTTCgacagtgagtTCCCCACCATTGCCAATGAGCAGGAACGTGTGGACTACAAGCGTGAGTTTGACCGGGATCACCAGGAGTACAAGGACCTGCAGGGAGAGCTGGACATCATCAACAAGAGCCTGTcagaggtggacagagagctgGATGAGCTGCAGGAGGGAAGCCCCCAGTTCCTGGATGCTATGGAAAAGTACAACAGGCTAAAGGACATAAAGAAGTCAGCAGATTACCAGTTGAAGAAGCGCAGGTGTAAATACCTGAAGGCCAAACTGTCCCACATCAAGAGGATGGTCGCTGACTACGATCGCAGGGCCTGA

Function

GO:

id name namespace
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06088 OCLN; occludin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432387 lncRNA upstream 66622 23807214 ~ 23807936 (+) True G380372
TU432345 lncRNA upstream 108714 23763779 ~ 23765844 (+) True G380336
TU432374 lncRNA upstream 111035 23763303 ~ 23763523 (+) True G380365
TU432372 lncRNA upstream 112150 23762021 ~ 23762408 (+) True G380363
TU432366 lncRNA upstream 121081 23753221 ~ 23753477 (+) True G380357
TU432451 lncRNA downstream 66409 23948593 ~ 23948796 (+) True G380431
TU432453 lncRNA downstream 70875 23953059 ~ 23953354 (+) True G380433
TU432454 lncRNA downstream 72038 23954222 ~ 23982341 (+) True G380434
TU432477 lncRNA downstream 100267 23982451 ~ 23982673 (+) True G380457
TU432481 lncRNA downstream 109895 23992079 ~ 23992280 (+) True G380461
XM_036977099.1 mRNA upstream 1781 23861151 ~ 23872777 (+) False marveld2a
XM_036977096.1 mRNA upstream 1781 23861152 ~ 23872777 (+) False marveld2a
XM_036977097.1 mRNA upstream 1781 23861160 ~ 23872777 (+) False marveld2a
XM_036977098.1 mRNA upstream 1781 23861161 ~ 23872777 (+) True marveld2a
XM_021602177.2 mRNA upstream 21005 23848238 ~ 23853553 (+) True stard4
XM_021602182.2 mRNA downstream 13890 23896074 ~ 23906001 (+) False LOC110523472
XM_021602181.2 mRNA downstream 13891 23896075 ~ 23906001 (+) True LOC110523472
XM_021602183.2 mRNA downstream 24047 23906231 ~ 23929665 (+) True LOC110523473
XM_036977100.1 mRNA downstream 157961 24040145 ~ 24075381 (+) False zmp:0000000846
XM_021602184.2 mRNA downstream 157963 24040147 ~ 24081954 (+) False zmp:0000000846
TU432381 other upstream 30213 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 30712 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 30847 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other upstream 31842 23838524 ~ 23842716 (+) False LOC110523468
TU432349 other upstream 133099 23740434 ~ 23741459 (+) True G380340
TU433317 other downstream 805555 24687739 ~ 24776429 (+) True G381239
TU434321 other downstream 1343258 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 2292761 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 2555435 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 2555475 26437659 ~ 26460535 (+) True LOC110522865

Expression Profile