RNA id: XM_036977097.1


Basic Information

Item Value
RNA id XM_036977097.1
length 3266
RNA type mRNA
GC content 0.51
exon number 9
gene id marveld2a
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23861151 ~ 23872777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGTGCGCTCGATTTTCCTGATCTGACCTGGCCATTGGGAGGACAGTGCACTTTAGGACAAATAAATGGGTCATGCGGTGTGCCGGGAGAGCTAAATCGGCGAGAAGCTACAGGTAGAGCGTACTTTTTCGACTGACGTCACTCCCAGGGATGGGCTTGTCACGTGGTTAAAGTCTGCTCTATCTTGTGGAAAACAACCTCTGAGCTTTAAGGGAAAAAACTGGGAGAAAAACTACTGGAGATAACAAGCTAATTTAGCAGGGGCAAAGGTGATTCCTGGATGTATGTATGATCTGTATGTCCAGACAAGGTTTGCATTCTGACCTGCAAGCCAATGTAAGTCGTGCTGAGTGACTGCGTGTGAAAGAGGTATTCCAACACAGGCTCATCTCTTTCCCCATGACCTCTGGAGGAGGTCCCTGCGGCCGCACTGAGCGTGTCCGTCATGAACCCCATTACGACCAGGTCCCGCCAGGCTCCCTACGCCGAAACGACCCCTTTGACCTTCAACCCCTGAGGTACCAGCGGAGCACCGAACTAGCCCTGAGCTCTGATCCCCTTCCGCCCCCTCCCCTGCCCGACCAGCCCCCTGTGGGGCCCGAGTATGACCCCAGCGTCAGTGAGGACAACCCAGACCCTGACCCAGATCCACACCTCGAACTAGACCCTGCCCTCGACATCAAACCGGTCCACCGTTTCATCCCTGACTCGTGGAAGAGCTTCTTCAGAGGGACCAGTCTCCGCAGCAGCAAGCCCTGCCCCatgcctgcctcctcctcctcttctaacaacaacaacagcaccagTGGCGGGGTGCGCTGCTCGCCCCCACACTCGCCCTCCCTGCCCAGATCCTACCGGGACCCCTATGGGGGGTCGGGGGGAAGCAGCTACAACTCCCGCAAGGAGCTCCTGGGAGTGGGTGACCACCAAGAGTCAATTTCGGGACGCACACTCCACACGGCGCTCACCTACAGCGAGCGGGTGGAAGAGTACCACGAGCGCTACGGCTACATGAAGTCCTGGGCGGGCCTGCTGAGGATTCTGGGATGCGTGGAGCTGCTGCTGGGTGCAGCGGTGTTCGCCTGCGTGTGCGCGTACGTGCACAAGGACAACGAGTGGTTCAACATGTTTGGCTACTCCTCGCCTGGAAGTGCATACGGAGGCTACGGAGGGGGGATGTACGGAGCGGGCACCGGAGGGTCCTACTACTCGGGTCCTCAGACTCCGTTTGTGTTAGTTGTGGCGGGGCTGGCCTGGATCGTGACTGTGATATTGTTGGTGATAGGGATGACTATGTACTACCGCACCATCCTACTGGATTCCTCCTGGTGGCCCCTGACAGAGTTTACTATAAACCTGGCCATGGCCGTGCTCTACATGGCTGCAGCTGTAGTCTACGTCAGGGACACCACGCGGGGCGGTCTCTGCTCCCTTCCCATCTTCAACAATGGCATCAACGGGGCTTTTTGCCGCACCGAGGCCGGACAGACAGCCGCCATCATCTTTCTGTTCGTCACCATGGTGATCTACCTGATCGGGGCCATTGTGTGTCTGAAGTTGTGGCGGCACGAGCAGGCACGCATGTACCGGGAAAAGTATGGCCTGGAGATGCATACGACAGATTCCCCTGCGGCGCGGTCTTTGATGCCGGTTCCAGAGCCAATTCAGAGTTCTACTGTGGTTCCCATCCAGGCTGCGGTACCCAAGGCAGGGCCACCGAAGGTTCTACAGGGAGCTATCCCTTCTGGTCACATCCCCAAACCAGTCATCATGCCTGACTATATAGCTAAGTACCCAACCATCCGTACGGTCGATGAGCGGGACCAGTACCGGGCTGTGTTCAATGACCAGTACTCTGAGTACAAGGAGCTCCACGCCGACGTGCAGGCCACCACCAGGAAGTTTGACGAGCTGGACGCCATGATGCGTGCCCTACCCCAGCACCCCAACAGTCAGATGGAGTATGACCGCGTAAACAAAATCCTTCAGGAGTACCAGAGGAAGAAAAATGATCCTACGTTCCAGGAGAAGAGGGAGCGCTGTGAATACCTGAAGAACAAACTGGCCCACATTAAACAGAAGATCCACGAGTACGACAAGGTCATGGAGTGGAACGATGGCTACGGCTAAACCAGCATGGCCTATCTGTCTGAGGAGACCACTGGGAACCAGTAGGAGACCAGTTAAAACTAGTAGGGACCAGTTTAAAATAAAGGAAAACAGATGGGGACCAGTTTAAAATAAAGGAAAACAGATGGGGACCAGTTTAAAATAAAGGAAAACAGATGGGGACCAGTGCAAACAGATGGGAGCCATTTTTAGTTTAAATTTGATTATGAATGAAACCGGTTCAGGCTGGTTGGAACGGTGGTTTTAAATGGTGTCCCTTTCCTTTCAGAGACTGCACTTCTTTTTGAACCGGAACATTTTCTTAATTAAACCCCAAAAGAAACTGGAGTGTGtgtgcgactgtgtgtgtgtgtgcatgatggAGAATTGACCAAAGGGGCATCTGGAGCAATGCTTTACTTTTTTACTGAAAATGACCTTGATATGCAAACAAATACCAGTATGGTACTGTAACTGGACATACCACTGTATCTAAGGCCTTCTAATCCATTTCACCATACTCACGCAACACCAGCTGCTCAAGTGTTTCACAAAGGGAGAACAGGATTAGGCTGCAATCCTTCAAATGGATCATGGAAATTGTTGCATGCGTTTACATTTGACATGCTTTTATCGATCACTTTTTTCTACTCCCTCCATTCCTTGACTCCTAGCTCACTGACTCATTGGAACACTAGAGTGATGACGATTGTCATGTTGCAATCCATTTTGTTTTTACTCAACCACTGTTCAACCACTATCCAAAGTTAACTTATTAGGTAACCGTGATACTATGGCTCACTTTGGGTATGGTTTACTACCTGAACTCTTCAACTGCTGTATCTCAAGACTGTCTGTGTTATACACTGACCATCTGGAGGATTTGTGAATTTCCAAATCATCATATTGTGAGAATCAGGTAACATACAGGTGTCCCTCCTGAGTGATGATTATGCTTTTTGGAAAGATCACACACAATTTCTGATATATTTAATGACCACACTAATTTCTGTGTAGTTTTAGTACCATGTTCTACCATTTCATTAAACAACTACTTATTTCCTCCACTTGTGTTAGGCTAGCAGTTTGTAGTAGTGAATAACCTTTGCATGTGCCTTGGTGTGTTAATGTAAATAAATGACTGTTATATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432387 lncRNA upstream 53224 23807214 ~ 23807936 (+) True G380372
TU432345 lncRNA upstream 95316 23763779 ~ 23765844 (+) True G380336
TU432374 lncRNA upstream 97637 23763303 ~ 23763523 (+) True G380365
TU432372 lncRNA upstream 98752 23762021 ~ 23762408 (+) True G380363
TU432366 lncRNA upstream 107683 23753221 ~ 23753477 (+) True G380357
TU432451 lncRNA downstream 75816 23948593 ~ 23948796 (+) True G380431
TU432453 lncRNA downstream 80282 23953059 ~ 23953354 (+) True G380433
TU432454 lncRNA downstream 81445 23954222 ~ 23982341 (+) True G380434
TU432477 lncRNA downstream 109674 23982451 ~ 23982673 (+) True G380457
TU432481 lncRNA downstream 119302 23992079 ~ 23992280 (+) True G380461
XM_021602178.2 mRNA upstream 7607 23848218 ~ 23853553 (+) False stard4
XM_021602175.2 mRNA upstream 7607 23848236 ~ 23853553 (+) False stard4
XM_021602174.2 mRNA upstream 7607 23848238 ~ 23853553 (+) False stard4
XM_021602177.2 mRNA upstream 7607 23848238 ~ 23853553 (+) True stard4
XM_021602173.2 mRNA upstream 19115 23838502 ~ 23842045 (+) False LOC110523468
XM_021601275.2 mRNA downstream 827 23873604 ~ 23883341 (+) False oclna
NM_001190446.1 mRNA downstream 1781 23874558 ~ 23882184 (+) True oclna
XM_021602182.2 mRNA downstream 23297 23896074 ~ 23906001 (+) False LOC110523472
XM_021602181.2 mRNA downstream 23298 23896075 ~ 23906001 (+) True LOC110523472
XM_021602183.2 mRNA downstream 33454 23906231 ~ 23929665 (+) True LOC110523473
TU432381 other upstream 16815 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 17314 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 17449 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other upstream 18444 23838524 ~ 23842716 (+) False LOC110523468
TU432349 other upstream 119701 23740434 ~ 23741459 (+) True G380340
TU433317 other downstream 814962 24687739 ~ 24776429 (+) True G381239
TU434321 other downstream 1352665 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 2302168 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 2564842 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 2564882 26437659 ~ 26460535 (+) True LOC110522865

Expression Profile