RNA id: TU432477


Basic Information

Item Value
RNA id TU432477
length 223
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G380457
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23982451 ~ 23982673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgacgaaggtatcgcggaagaagaagtcgaactgcgacaggattaatgacccgagaaatacggaacggaccaatgaaccgcggggtcaacttgcgagaagccgtcttaaggggaaggttctgagtggatagccaaactctctgaccgcgacaatatctaggactcttagttctacgcttattagcagccctcacagtctgcgtcctataacggcaaagtgcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432454 lncRNA upstream 110 23954222 ~ 23982341 (+) True G380434
TU432453 lncRNA upstream 29097 23953059 ~ 23953354 (+) True G380433
TU432451 lncRNA upstream 33655 23948593 ~ 23948796 (+) True G380431
TU432387 lncRNA upstream 174515 23807214 ~ 23807936 (+) True G380372
TU432345 lncRNA upstream 216607 23763779 ~ 23765844 (+) True G380336
TU432481 lncRNA downstream 9406 23992079 ~ 23992280 (+) True G380461
TU432497 lncRNA downstream 40920 24023593 ~ 24024258 (+) True G380477
TU432501 lncRNA downstream 46303 24028976 ~ 24029576 (+) True G380481
TU432502 lncRNA downstream 47460 24030133 ~ 24030373 (+) True G380482
TU432544 lncRNA downstream 138194 24120867 ~ 24121726 (+) False G380524
XM_021602183.2 mRNA upstream 52786 23906231 ~ 23929665 (+) True LOC110523473
XM_021602182.2 mRNA upstream 76450 23896074 ~ 23906001 (+) False LOC110523472
XM_021602181.2 mRNA upstream 76450 23896075 ~ 23906001 (+) True LOC110523472
XM_021601275.2 mRNA upstream 99110 23873604 ~ 23883341 (+) False oclna
XM_036977100.1 mRNA downstream 57472 24040145 ~ 24075381 (+) False zmp:0000000846
XM_021602184.2 mRNA downstream 57474 24040147 ~ 24081954 (+) False zmp:0000000846
XM_021602185.2 mRNA downstream 57475 24040148 ~ 24081954 (+) False zmp:0000000846
XM_021602186.2 mRNA downstream 57475 24040148 ~ 24081954 (+) False zmp:0000000846
XM_021602187.2 mRNA downstream 57475 24040148 ~ 24081954 (+) False zmp:0000000846
TU432381 other upstream 138106 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 138605 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 138740 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other upstream 139735 23838524 ~ 23842716 (+) False LOC110523468
TU432349 other upstream 240992 23740434 ~ 23741459 (+) True G380340
TU433317 other downstream 705066 24687739 ~ 24776429 (+) True G381239
TU434321 other downstream 1242769 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 2192272 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 2454946 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 2454986 26437659 ~ 26460535 (+) True LOC110522865

Expression Profile