RNA id: XM_021603696.2


Basic Information

Item Value
RNA id XM_021603696.2
length 1837
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110524236
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60952905 ~ 60966146 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAGCAGTTGTCCCTCAGCTCACGTGCGTATTCCTTCCCGAGACTACTTTACTGCATTTATGAGTCCGGAGACTTTCCTTGGCAGTCTAATATTTTCATAAAGTGGGAATCGTCAAAATGGGAACCCGAGACGACGAATACGACTATCTATTCAAAGTGGTGCTGATCGGAGACTCTGGTGTGGGGAAGAGTAACCTACTGTCCCGTTTCACACGGAATGAGTTCAACCTGGAGAGCAAAAGCACCATCGGTGTGGAATTCGCCACCCGCAGCATCCAGGTGGACGGCAAGATGATAAAGGCCCAGATCTGGGATACAGCTGGACAGGAGCGCTACAGAGCCATCACCTCAGCGTACTACCGGGGGGCGGTGGGGGCTCTCCTAGTGTACGACATTGCCAAGCATCTAACCTATGAAAATGTGGAGCGCTGGCTGAAGGAGCTGAGGGATCATGCTGATAACAACATTGTCATCATGCTGGTGGGCAACAAGAGTGACCTGCGCCACCTCAGGGCAGTGCCCACAGACGAGGCTCGCGCCTTCGCAGaAAAGAATACGCTATCATTTATTGAGACCTCCGCTTTGGACTCCACTAATGTAGAAGAGGCGTTCAAGAACATCCTCACAGAAATCCACCGAATCGTATCACAGAAGCAGATAGCTGACAGATCAGCACATGACGAGTCTCCAGGCAACAATGTAGTGGACATCAGTGTCCCCCCCACCACTGATGGGCAGAAAAACAAACTACCATGCTGCCAAAGCCTGTGACCCGCAATACCACCTTCCAACCCCCACCCCTCACTCATCTTTCGTTTGTCCTGGTTGTTGAACTGCTGCGGTCTCTATTCCGCCATGTGTTTTAGAAGTCTCCTAGAAAATCAGACTTTCTAGATAAGTCCTTTCTCCCTTTTTTGTCTGTATGCTATCTTTTTATAACCTCAAAGCTCATGTCTTTTACCAAATGATAGACAAAAAtcctattttgaattcaggctctgATCGTGTGACCCAATCCTGTAGAAGGAATGGTGAGAGATCAGTTTGTCCTGTGCTTCTGGTTGCCTTGCTGCTGTCCTCAGTCCCTGTCCTGAGTGTGGCATGAAAGGAGCAAGAACAGAGACCTGGGGTAGTGACTGACTTGGGATGATATTAAGTGGGGGGGCTTTGTTACGCCTATGGTTCAAAGAGATGCCAAAGTGTGTCTGTGAACATTTTCAATCTAAAATAATCTAATCTAAATAGTAAACTTGCAGAGACACTTTTGTCAAAATTTGACTTTTTCCAATTGTATCATGCACTTTGTTTCACTATTGTTAGATGCAgtcactgtgttctctctgtaaTTAGATCATACTATGAATTGATCCAGTAGTCCAACTACAGTTGAAAGCAAACATAAATATGCATCTTGTGTCCTGCCAATCATTTCAATGGAACTCACCATGTAAAATCAACAACTAATTCCGAAGGACTAACATCTTTTAAATGACAACACTTAGCTTGCTTGGTTTGAGAGGGGCCCCCCTGATATACAGTAACACTCAATATCTAGGGTGGAGGATGTTTTCATTGCTTCACTCTACTCTAACCATTTTGCCTCTAAAATGTTGTTGACAGTGGAATTTTTAAGAAAGGAAGGTTGCTTTTGTATGGTTGGCTATAATGCCTTATGTCTCTCCTTTCTAGTAGATTTGCCTGTATGTAATTTTCTGTCACAGGTCCAACTTTTAAATCAATAAACATGTGTTAATTTGCCTTTTCATCAGGTAGCATTGAAATGGAAATAAACCAAATGAATGTCACTTGTTGACAGACATTTTCTTTGAACATCAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07905 RAB11B; Ras-related protein Rab-11B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479724 lncRNA downstream 15684 60937000 ~ 60937221 (-) True G423394
TU479721 lncRNA downstream 19857 60932799 ~ 60933048 (-) True G423391
TU479714 lncRNA downstream 51150 60901516 ~ 60901755 (-) True G423384
TU479664 lncRNA downstream 68939 60861527 ~ 60883966 (-) True LOC110524228
TU479690 lncRNA downstream 96982 60855260 ~ 60855923 (-) True G423360
TU479730 lncRNA upstream 363 60966509 ~ 60967764 (-) True LOC110524237
TU479767 lncRNA upstream 65125 61031271 ~ 61093488 (-) True G423435
TU479834 lncRNA upstream 280412 61246558 ~ 61246791 (-) True G423495
TU479836 lncRNA upstream 282422 61248568 ~ 61248887 (-) True G423497
TU479849 lncRNA upstream 297745 61263891 ~ 61265340 (-) True G423509
XM_021603691.2 mRNA downstream 1263 60944007 ~ 60951642 (-) False LOC110524231
XM_021603692.2 mRNA downstream 1263 60944007 ~ 60951642 (-) True LOC110524231
XM_021603687.2 mRNA downstream 22242 60915224 ~ 60930663 (-) True LOC110524230
XM_021603688.2 mRNA downstream 22791 60915224 ~ 60930114 (-) False LOC110524230
XM_021603686.2 mRNA downstream 22808 60915017 ~ 60930097 (-) False LOC110524230
XM_021603697.2 mRNA upstream 254 60966400 ~ 60970977 (-) False LOC110524237
XM_036978007.1 mRNA upstream 254 60966400 ~ 60970979 (-) False LOC110524237
XM_036978008.1 mRNA upstream 254 60966400 ~ 60970979 (-) False LOC110524237
XM_036978009.1 mRNA upstream 6997 60973143 ~ 61053401 (-) False pip5k1ca
XM_036978010.1 mRNA upstream 6997 60973143 ~ 61053401 (-) False pip5k1ca
TU478587 other downstream 851849 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1814648 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1916606 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2538762 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2838845 58112387 ~ 58114060 (-) True G420193
TU479791 other upstream 92848 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 650724 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 683821 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 692887 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 922052 61888198 ~ 61927422 (-) False G424649

Expression Profile