RNA id: XM_021603687.2


Basic Information

Item Value
RNA id XM_021603687.2
length 2100
RNA type mRNA
GC content 0.55
exon number 15
gene id LOC110524230
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60915017 ~ 60930663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCTTGCTTATTCATGGTACGTCGAAGTCGATCGATGCCACGCCTTCTTAATCACATCCACTCGGAGTTTGTGCTGTAGTACAAATAAACACAACTGCTTATTTGGACGTAGCTAGCTATTTGACAGTGAAAAAGCGAGGGAAATGAACGGCAAGTCCAAGCATGAACCCAATACCAGGAAGGAGAGGCCCCAGAAGCGTGGAGGTGGTCGCTTTGAGCCCTATGGAAACCCATCAAAGAGATACCGTGTGTTTGTCAGCAACATCCCATACGATGTGAAATGGCAGGCACTCAAAGATCTAATGAAAGAAAAAGTGGGTGAGGTAACGTACGTGGAACACTTAATGGACGGAGAAGGCAAATCAAGGGGTTGTGCGATTGTTGAGTTCAGGACTGAGGAGCTGATGAAGAAGGCTGTGGAGAAGGTCAACAAGCACAACCTGAATGGTCGGCCCCTGAAGGTTAAAGAGGACCCAGATGGTGTGATTGCCCAGAGGGATTCACACAGGGcccagggtggtggtggtggccccCCAGGCGGCCATGGTGGAATGAacatggggatggggatggatcACATGAATATGGAGCGGATGAACATGGACTGCATGGGCCCAGGACCGGGCGGCCCACCCATGGTCAACATTCCCCCCAGCCTCATGAACAACTCTAACATCCCCAATGAGATTATTCACGGGCTGCAGGCTGGCAAGATCGGAAGCACGGTCTTCGTAGCTAACCTGGACTACAAGGTTGGCTGGAAGAAGCTGAAGGAGGTGTTTGGCATGGCAGGAGTGGTGGTGCGTACTGACATCTTGGAGGACAAGGATGGGAATAGCAGGGGCATGGGAACTGTCACCTTTGACATGCCTATTGAAGCTGTCCAAGCCGTCAGCATGTTCAACGGTCAACTACTGTTCAACCGGGTCATGCATGTCAAACTGGATGAGAAGTCCTTACCAAAAGGAGACTTTGCACCACAGGAGAGACCCCCAGCACTACCCCGTGGCCTGAGTGGCATTGGGCAGGGACTGGGGCCTGGTGGCCAACCCATTGACGCCACCGCACTGAACAGAGGTGGTGGAGGAATGGGCAACATGGGACCTGGGGGCATGGATGGCATGGGCTTCGGTGGTGGCATGGGTAGAATGGGAGgCATGGATAACTTTGGCGGAGGAATGAATAACATGGAGCGCTATGGACCATCAGGAATGGGACGTATGAATGAGATGGACCGTGGGATTGGTGGTGCTTTTGACCGGGAGTGTGGTCGAAATGAAATGGGCATGTCTCGCAATAATTTTGGAGAGTCCTTTGATAGAGGAATGGGTAGCTCACTGGGCATGGACCGCATGAGCTCTGGCATGGATCGCCTGGGTGGTGGAATGGACCGTCTGGgtgggatggagaggatggaccgCGTGTCTGATCTGGACAGGCTGGGGGGCTCTGGCTTTGACCGTATGGGCTCTGGGCTGGACCGGCTGGGTCCCAGTATGGACAGACTTGGTTCTGGCCTGGATCGTATGAGCTCCAGCATGGACCGCCTGGGCCCAGCTGGGTTTGACTGCCTAGGCCCATCCAGTTTAGACCGCATGTCCGCCGGCCTGGACTTCACCTCCCCCATGGGCATGGCGGACCGCATGAACACCGGCATGGAGAGGATGGGAACCAACTTTGACCGCATGGGGTCTGCTGGCATGGACCGCTTCCCGACCACCGGGCTGGACCGCATGGGCTCCACCATGGACCACATGGGCGCTGCAAGTGTTGGAGGCCAGTATGACCGGCCTGCTGAGATGGAACGTGGGGGCTTTGGAGGAAATGGCTTTGGAGGTCCTGGGGCCAATGCCAGGAAGGGCTGTCAGATCTTTGTCCGGAATCTGCCATATGACTTCACCTGGAAGGTGCTGAAGGATACTTTCAATACATGCGGTATCGTCCAATATGCTGACATCAAGACGGAGAATGGCAAGTCCAAGGGCTGTGGCGTGGTTCGCTTCGACAACCCGGAGACTGCCGAGAGAGCCTGTCACACCATGAATGGCTACAGGCTGAATGGAAGAGAGATTGACGTCAGAATTGACAGAAATGCCTAA

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12887 HNRNPM; heterogeneous nuclear ribonucleoprotein M

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479714 lncRNA downstream 13469 60901516 ~ 60901755 (-) True G423384
TU479664 lncRNA downstream 31258 60861527 ~ 60883966 (-) True LOC110524228
TU479690 lncRNA downstream 59301 60855260 ~ 60855923 (-) True G423360
TU479691 lncRNA downstream 60109 60854583 ~ 60855115 (-) True G423361
TU479695 lncRNA downstream 62736 60852156 ~ 60852488 (-) True G423365
TU479721 lncRNA upstream 2136 60932799 ~ 60933048 (-) True G423391
TU479724 lncRNA upstream 6337 60937000 ~ 60937221 (-) True G423394
TU479730 lncRNA upstream 35846 60966509 ~ 60967764 (-) True LOC110524237
TU479767 lncRNA upstream 100608 61031271 ~ 61093488 (-) True G423435
TU479834 lncRNA upstream 315895 61246558 ~ 61246791 (-) True G423495
XM_036978004.1 mRNA downstream 943 60902398 ~ 60914281 (-) True timm44
XM_021603685.2 mRNA downstream 947 60902398 ~ 60914277 (-) False timm44
XM_036978003.1 mRNA downstream 1287 60902398 ~ 60913937 (-) False timm44
XM_036978005.1 mRNA downstream 1488 60902398 ~ 60913736 (-) False timm44
LOC110524228 mRNA downstream 31216 60861447 ~ 60884008 (-) False LOC110524228
XM_021603691.2 mRNA upstream 13344 60944007 ~ 60951642 (-) False LOC110524231
XM_021603692.2 mRNA upstream 13344 60944007 ~ 60951642 (-) True LOC110524231
XM_021603696.2 mRNA upstream 22242 60952905 ~ 60966146 (-) True LOC110524236
XM_021603697.2 mRNA upstream 35737 60966400 ~ 60970977 (-) False LOC110524237
XM_036978007.1 mRNA upstream 35737 60966400 ~ 60970979 (-) False LOC110524237
TU478587 other downstream 814168 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1776967 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1878925 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2501081 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2801164 58112387 ~ 58114060 (-) True G420193
TU479791 other upstream 128331 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 686207 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 719304 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 728370 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 957535 61888198 ~ 61927422 (-) False G424649

Expression Profile