RNA id: XM_021603685.2


Basic Information

Item Value
RNA id XM_021603685.2
length 2699
RNA type mRNA
GC content 0.47
exon number 14
gene id timm44
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60902398 ~ 60914281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATGCCTTTGGGGGTCAGGAGATTAGACATGGTATCCTTCGTGTGAGGCTCTAAATGTAGTCTGCCGGTTATTTTTGTACAATAGCTTCTCGAAGAGGGAAGCTTTGCTCCTCCACTAATACGTCAGAAGGTCATCAGCGGAAAAGGTCACAGGCAATGCAATCAAGATGGCGGCCTCCTTGTGTCAGTGTTACCAGCTGTGTGTCAGAAGAAGTTTGCTTGTCTCCAGTCCTTCATATTTGCTCCTACACAACAGACCTCATGTATACAGGATATGTGGGTCTCTCACAAGTTCTTCACAGGTACGGCATGCATCAGACAGGGGAGGTAGCCGAAAAGGCTTCTTTGGGGGGTTCTTGGACAACCTCAAACAGGAGCTCAGCAAGAACAAGGAAATGAAGGAGAACATCAAGAAGTTTCGCGAGGAGGCCAAAAAGTTGGAGGAATCagaagctctgaagcaagctcgGAGGAAATATCAAACCATAGAGTCTGAAACTGTGAAGACGTCTGAAGTTCTGAAGAAGAAGTTAGGGACCTTCTCAGAGACTGTGAAAGAGGGTCTGGAAGAGGTCAGTCGTACAGATATAGGGAGGAAGATCAAGGAGGGCGTGGAGGAAGCAGCGAAGACAGCCAAGACGTCTGCGGAGTCTGTGTCCAAGAGTGGAGAGAAACTGGGAAAGACCGGTGCCTTCAGGGCAATATCTCAGGGTATAAAGAGTGTGAAGAAGGAGATTGATGATCTTAATCAGAGTGGGCCCTACCGGGCCCCCAAGAGACTACGGAAGAGGAGTGACTTTTCATCTAAGGCTGCAGAAAATGAGAACAAGGTCTTCGAGGCCAATGAGGAGGCCATGGGGGTGGTGCTGCACAAGGACTCCAAATGGTACGCACAGTGGAAGGACTTCAAGGATAACAACATGGTTTTTAACAGGTTCTTCGAAATGAAGATGAAGTATGATGAGAGCGAGAATGCCCTCGTCAGAGCGTCTCGTGCCGTCACAGATAAAATGACCGACATCCTAGGTGGGCTCTTCTCCAAGACCGAGATGTCAGAGGTGCTGACAGAGATTCTGAAGGTGGATCCGTCATTTGACAAAGATGTCTTCCTCAAGCAGTGTGAATTTGACATCATACCCAACGTCCTGGAGGCCATGATCCGAGGGGAGCTGGAGGTTCTGAAGGACTGGTGTTATGAAGCGACTTACAGCCAGCTGGCCCACCCCATTCAACAGGCCAAGGCTATGGGCCTGCAGTTCCACTCTAAGATCCTGGACATAGACAACATTGATCTGGCCATGGGGAAGATGATGGAGCAGGGTCCGGTGCTGATCATCACCTTCCAGGCCCAGCTGGTCATGGTGATCCGCAACACTAAAGGAGACGTCATAGAGGGAGACCCTGACAAGGTGCTGAGGATGATGTACGTGTGGGCCCTGTGTCGAGACCAAGAGGAGCTGAACCCCTACGCAGCCTGGAGACTCCTGGATATCTCTGCCTCCAGCACTGAACAGATCCTCTgagaccaacacacacatacacccagggCTGGAagactgaggagaagaggaggcggGCTGGACGGGAGAACATGGAATTACCACAGGGACATGAACAAGCAGTGCTGACCATTTCAGCAACCCAGCTAACTCCTCCTCCAGCATGGTTTTGGGTGGCCCACTGTGGACTGCTTCTTATGGCTGCCCCTCATGTACCAGACTGGCAGTGTTCACAGACCAGGATAGAGGAGACCCAGACTGGATAGACCTGTGTTCCCACTGGGTGACTCTAGGGGCAGTAGTCCACTCAGAGCAGTcgctctgtccttctgtctgtcacACCATGGTCAGATAAGTTGacactgtcctcctcctctcccagacataATTATGTTAACTGGAGGATTGAGGATAAAGTGAAGGGTGTCTTTAATGCTTCTCTGTCGATCCCTTCCTAGTTTGGGGAGGACATTTTGGATGCCATGTGGTCCACCAGTGCCCTATACACACATTTGTATGATAGCCCAGTCTAATTATTGAATTGAGAAAATCTATAtttattatataaaaaaaaaagcccCTGCTTCACCTTCAGACATTTTGTTTGAGGAGTTATTTTGTACCCATTTGCTGTAAAATGTTTAGGCTTGCCTTAAATAAACTTGGAAATATCTGCTGATATTTTTGACGGCAAGCTGTTTATTATTAAAAACTCAATGAATTGGGACTTCAATGTAAGgcatgattttattttattttttttgaggaCACAAATCCTAAAAGGTTTTCTGTTGCACCAAATATTAACACTATTGTTTTAGTGTCACTAATTAGCATTCAGCCATTTAGCATCTGTGAACTTGGTGGTATGGCACACAGTAGATTTGGAATTCCATTGTTTTTATTAAGGCCTCCAAAACAACGCCATGCTACTAAACGGTCCTAAAACAATGGTGCCACACTAGGGGCTAGTCAGACCTCATTATTAATAGAGACAGATGTTTATGTACACGTGGATCCACCACTCTTCTGACAACTCATTGTATTGTGATTTGCTGGTATGTCAGTGTTTGTTTTTATATCAAGCCCACTTGGCATAGACCGAAGGCTCCACATACTGGTGATTTTTATGATGGTAGTTTCTCATTACCTCATGGCCAAAATGAGTCAACTTAATAAACTTTTCTGAATTCCAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479714 lncRNA downstream 643 60901516 ~ 60901755 (-) True G423384
TU479664 lncRNA downstream 18432 60861527 ~ 60883966 (-) True LOC110524228
TU479690 lncRNA downstream 46475 60855260 ~ 60855923 (-) True G423360
TU479691 lncRNA downstream 47283 60854583 ~ 60855115 (-) True G423361
TU479695 lncRNA downstream 49910 60852156 ~ 60852488 (-) True G423365
TU479721 lncRNA upstream 18522 60932799 ~ 60933048 (-) True G423391
TU479724 lncRNA upstream 22723 60937000 ~ 60937221 (-) True G423394
TU479730 lncRNA upstream 52232 60966509 ~ 60967764 (-) True LOC110524237
TU479767 lncRNA upstream 116994 61031271 ~ 61093488 (-) True G423435
TU479834 lncRNA upstream 332281 61246558 ~ 61246791 (-) True G423495
LOC110524228 mRNA downstream 18390 60861447 ~ 60884008 (-) False LOC110524228
XM_021603680.2 mRNA downstream 173426 60695903 ~ 60728972 (-) False cers4a
XM_021603681.2 mRNA downstream 173426 60695903 ~ 60728972 (-) False cers4a
XM_021603682.2 mRNA downstream 173426 60695903 ~ 60728972 (-) False cers4a
XM_021603677.2 mRNA downstream 219515 60678698 ~ 60682883 (-) True ndufa11
XM_021603686.2 mRNA upstream 740 60915017 ~ 60930097 (-) False LOC110524230
XM_021603688.2 mRNA upstream 947 60915224 ~ 60930114 (-) False LOC110524230
XM_021603687.2 mRNA upstream 947 60915224 ~ 60930663 (-) True LOC110524230
XM_021603691.2 mRNA upstream 29730 60944007 ~ 60951642 (-) False LOC110524231
XM_021603692.2 mRNA upstream 29730 60944007 ~ 60951642 (-) True LOC110524231
TU478587 other downstream 801342 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1764141 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1866099 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2488255 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2788338 58112387 ~ 58114060 (-) True G420193
TU479791 other upstream 144717 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 702593 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 735690 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 744756 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 973921 61888198 ~ 61927422 (-) False G424649

Expression Profile