RNA id: TCONS_00031123


Basic Information

Item Value
RNA id TCONS_00031123
length 1579
RNA type mRNA
GC content 0.51
exon number 9
gene id XLOC_015577
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 32780138 ~ 32790887 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTGCTCGGCTCAGAATCTCACCCATAACTCTTTACCATGTCTCTGTCCATTTCAATGGCCTCCTCCAGGATGTCTGGTGGATATGGAGGTTTCGGTGCGGGTGGTGGAGCAAGGCTGGGTCTCGGGCTGGGGGGTGGTGCCAGTTTAGGTAGAGGTCTTGGTTTAGGGGGAGGACTTGGATATGGTGCAGGTGGAGGTTTTGGACTTGGCCTTGGTGGAGGTGCAGGGGCAGGTGCGGGATTGGCActgggtggtggtggtggtggtgcacTGGTTGCCAGTCCTGCATTTGCTATGGGTCGTGCTGTTGCTGCTGGAGGAGTCGGTGGAAGCTCTGCATTCGCTGCTGGTCCTGCAACCGCTGCTGTAGCCCCCATCCTTTCCAGAGCGGCTGAAAAGCACACACTGTCTGGGCTGAATGACCGCTTTTCCACATACATGGCCAAAGTGAGGGCGCTCCAGCAGGAGAACGCAGCTCTGGAGGCCAAACTGTCCCAGCTAACCGGGGGGGCAGATGTGTCTCCAGAATCCTCAGTGGCTGCAACGGTGGAGTACGAGGCTCAGCTGAGCGAATATCGCAGCACCCTGGAAACTCTCACCATCGACACTGTCAAACTAGAGATTGAGCTGGACAACGTCAGGGGAACTGCTCATGAGCTGAAGGCTAAGCTTGACTTTGAGCAAGGAGTGAAGTTTCAGCTTGAGTCTGATATCGCTGCCATGAAAAAGGACATTGAACTGGCTTCTGATCTAAGAATTGACCTGGATGCTAAATACTCTAGCTTGAAAGATGAGCTGGACTATGTGAGCAAAACACAAGAACAGGAACTATCATCTCTGCAGTCTAAACTGGGCACATCAACAATGGACACTTCAGTTTCAATGATTGAAGTAGACACCGGGAAGTCCTTTGACATTGCTACAGCACTCAACAAGATGCGAATGGAATATGAGAAAACTGTACAGCAAAACAGAGAGGAGGCAGAGGCATATTACAAACTCAAGATGGATGAGATGCAGACGGTCACGGCCAAAAACACAGAGGCTGTGTCGTTGACTAAAGCAGAGATCACATCAGCCAGGAAAGAGCTGCAGACACTGAGTTTAGAGCTTCAAGGGCTTGCAGCTGCAAGCATGAGTCTGGAGCAGAGTTTAGCAGAAGCCCAGGCACAGTCCAGTGTTGGAGTTGCTGAGTACCAGGCACAGATCGCTAGCCTCACATCAGCAATAGAGGTGGCTAAAGCTGACCTTCACAAACAGATCCTGGCCTACCAGGAGCTGCTAGACATCAAACTCGCCCTGGATGTAGAGATCTCCACCTACAGGAAACTTCTGGAAGGAGACGACTTCAAGATGCCCGAGTTTACAGAGACATCCTACACTTTTTCAGCGGGTCAAATAAAGGTCAAAGAAATCATTACAGAGACATCAGTTATCTCTGATGCAGATGATACTGAATCCTCCTAAACTCTGGGAAAAATCAAGTCAGTGCAGTCTTGATGAATGCAAAGCCCCAGCCCAAACGTGAAAAGTCAAGTCCCATCCACTGTTTCTCCAATAAAGCTGCATTGTGACGA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005882 intermediate filament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060312-16 Predicted to be located in intermediate filament.

Ensembl:

ensembl_id ENSDART00000082250

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033590 lncRNA upstream 60164 32701820 ~ 32719974 (+) False XLOC_015574
TCONS_00033589 lncRNA upstream 132734 32644925 ~ 32647404 (+) True XLOC_015573
TCONS_00033588 lncRNA upstream 142633 32637080 ~ 32637505 (+) True XLOC_015572
TCONS_00033587 lncRNA upstream 172111 32604867 ~ 32608027 (+) True XLOC_015571
TCONS_00033586 lncRNA upstream 389164 32387279 ~ 32390974 (+) True XLOC_015570
TCONS_00031131 lncRNA downstream 63314 32854201 ~ 32862149 (+) True XLOC_015583
TCONS_00033591 lncRNA downstream 75688 32866575 ~ 32883571 (+) False XLOC_015584
TCONS_00033592 lncRNA downstream 75689 32866576 ~ 32985766 (+) False XLOC_015584
TCONS_00033593 lncRNA downstream 75689 32866576 ~ 33029428 (+) False XLOC_015584
TCONS_00033594 lncRNA downstream 75700 32866587 ~ 33029428 (+) False XLOC_015584
TCONS_00031121 mRNA upstream 23432 32743807 ~ 32756706 (+) True XLOC_015575
TCONS_00031114 mRNA upstream 761767 32016256 ~ 32018371 (+) False XLOC_015566
TCONS_00031115 mRNA upstream 762544 32016516 ~ 32017594 (+) True XLOC_015566
TCONS_00031112 mRNA upstream 770422 31948352 ~ 32009716 (+) False XLOC_015565
TCONS_00031113 mRNA upstream 773826 31957554 ~ 32006312 (+) True XLOC_015565
TCONS_00031125 mRNA downstream 5986 32796873 ~ 32799083 (+) True XLOC_015578
TCONS_00031126 mRNA downstream 35348 32826235 ~ 32834441 (+) False XLOC_015579
TCONS_00031128 mRNA downstream 44792 32835679 ~ 32838894 (+) True XLOC_015580
TCONS_00031129 mRNA downstream 52246 32843133 ~ 32846324 (+) True XLOC_015581
TCONS_00031130 mRNA downstream 55715 32846602 ~ 32850621 (+) True XLOC_015582
TCONS_00031122 other upstream 19806 32758663 ~ 32760332 (+) True XLOC_015576
TCONS_00031120 other upstream 72727 32701851 ~ 32707411 (+) True XLOC_015574
TCONS_00031119 other upstream 76806 32701820 ~ 32703332 (+) False XLOC_015574
TCONS_00031118 other upstream 172111 32604847 ~ 32608027 (+) False XLOC_015571
TCONS_00031110 other upstream 831683 31942459 ~ 31948455 (+) False XLOC_015565
TCONS_00031127 other downstream 35616 32826503 ~ 32827253 (+) True XLOC_015579
TCONS_00031140 other downstream 398697 33189584 ~ 33200368 (+) False XLOC_015585
TCONS_00031160 other downstream 965491 33756378 ~ 33757568 (+) True XLOC_015600
TCONS_00031162 other downstream 1109548 33900435 ~ 33900512 (+) True XLOC_015605
TCONS_00031163 other downstream 1111438 33902325 ~ 33902455 (+) True XLOC_015606

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU36531 True 1903 TUCP 0.37 9 CI01000004 12376168 ~ 12384780 (-)
eurasian perch (Perca fluviatilis) TU36531 True 287 lncRNA 0.49 1 NC_053114.1 14889777 ~ 14890063 (-)