RNA id: XM_021604411.2


Basic Information

Item Value
RNA id XM_021604411.2
length 5427
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110524597
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77181914 ~ 77215911 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTTCGATACACGCGTCTATAgacaatatattattatttggGGTATCTGGTGTTGACATGTTTAGAGGTTCGTGGTAGCCCTGGTTTTATTGAGCACGGAATACAGCGGACACACTGGCACCATACTGGCATAGAGATGAGATAACGCAAGACGTTGGCTCGACATGCATAATGGTGGGTTTTCAGAAGACCGTAGAGTGGAACCAATGGTTTGGAACAGATTGAACATACTGGGGAGATGGCTGATATAAAGCCAAATGCACAAGAGGACAAAGAAGGAGATGTGGTGGAACCATTGTGTAATAGCTCCTTTGCCACTCAGGAGCCATTACAGCGTCACACATCCTCCCTTAAGAACAATGCTGCAAGGTTGTCAGAGCAGCTGTCCTCTGGCAGACTCCCAAACCCTTTAAATGGAGCACAGCCCAGTCCAATTGTACCCAGCAGTGTCCCTGCTGTTCCCCACACAGCCCAAGCAGCCCATTCACTACCTTTCGTAGCACTTGTTAATGGACCTGCTTCACACCCTAACTCAGAGGAGAGCTGTGGCCTGAACAAAGACAGCACAACGCCCAACAATGTCCTGGTGGAGGCCCAGGACACCCAACTATGGCAAGTAGAGAGGGACACAAGTCCTCAGGTGTTACCGCCACCCAGTGAGTTTCAATCAGACGCCCTGAAGAACCCAGCAGGGCCAGGGCCTGTTCTGAAAACATTAGCCACCACGCAGCCAGAGGCCAACAACACGTcaccatctgactctggggagagTGAGGCTGAACTTCCCTACCAGGCCCGTAACACCACCTTGTCAGACCACAGTCCACAGCCTCACCAAACGCCAATTAACCAAATATGGACGGCTGAGGGAGTCAAGGCTAGAGCTAGATCTATATGGGACTTACACACCACAGAGTCCTCTGAGAGCTCGTCGGACGGTTCTGATGGGGCTAACTCACTACACTGGGATTCTCAGAAAGAGCTCATACGGGTGTTGTGGAACAATCGTAACGTTGACAACAGCTTACAGGAAAACACTGCGGGAGTGGGAGTGATGCCTCAGCTTACCAGCCAAAGACAGAGGAAGCGTAAAATACACCTGGTGGGTACGACAGGCTCTCCTGAAAAAGTTTACAACAGCAGCTCGAATCACACCTACAAAAAGTGGCATattgaagaggaggaagatgatgacCTGGATTTTGACATCGCCAACGTAAATGATGAGGATTTCCCTTGTAAAAAGGCTGATGTACAATCTTCTGTGAATTCATGTCAAGAGCATCCCAGTGACAGTCCTGTAATCATCAAGAAACTGATTATAAGAGCAGATTGCCACGAAGACAATCACTCCGACTCCCTCTTTAGTAGAAAACCCAAGCAGCTAAAGACAGAGCAATCCGAACAAGAACCATCGTTCTTCCCATGCACAAAGTGCAATGTTAATTTCAAGGAGAAAAGGCATTTGCATAGACATATGATGTATCATTTAGATGGGCATAATCATCAGATACGCCACCACGAGAACGTTCCAAGGCCTTTTATATGCAGGGAGTGTGGGCGTTCGTTCCGCGATCGCAACTCCCTCCTCAAGCACATGATTATCCACCAGGAGAGACGGGAGAAACTTATGGAGGAGATACAGGGACTCAACAAACTCCGAGACGAAGGCAGGAACGCCAAGCTGCAGTGCCCGCAGTGTGTGTTCGGGACCAACTGCCCCAAGACGTTCGTCCAGCACGCCAAGACACATGAGAAGGACAAACGTTATTACTGTTGCGAGGAGTGCAACCACATGGCCCTGACAGAACGGGAGCTTGAAGCACACCTGTACGCGGTGCACTGTGACACACTGCAGTACAAGTACAAGAACATGATCAAAGATGAGGAGTCAGAGTTTCCTACAAATAACAATGAAGATAATGAATCAAGATCTGTTGTGTTTCACTGTAAAGTGTGCCCTTTCAGCACCCAGAATCAAAATGACCTGAAGAGCCATTGTGACCTAATACACCAGTTTTGTGAAGATGAACGTGAAAGTCCACCGTTTAACAAAGCATCTGACCATCAAGATCAATATAGGCTAGCTGGCCCGTCCAAAAAAGCAGATTTAAAACTCCTACAGCTGAAGCAAAAGTTCTGTATTAAAAAGCCTGCTTTCTGGAAAAGAGCAGATTTGCCCTTTTGGTCTAGTAGTGTAGCTGACTTTTACACGAGAAACAAAGCAGACGCACAGAAGTATTATAAAGATCTTACCGCCTCCCAGTTCAAATGTAGTCTTGGCAGCTCAACAAACAAGCTGTCACCATCTATGTGGAGGAGCGACAAGCCAAACAAATTATCTCCCAAACCAACAGAGAAAATAGACGTGACAACAGGTCTCCCTTATGTTGAGGAAGACAATCAACAATACGACCATGTCATTTCAGGAATCTCAGAAAGGACAAAATATCCCTCAAATGTTGATGTGTTGGTTACATCCAAGATGGCTAAAATAGGCCAGATGCTAAATCATAGCTATGACTCTGACAAGAGTCAGGGAGATAGCAACGACTTGACCTGCAGGAAGTCAGAGCCCCAAGCTGTTACCCGAAAGTCTCCATCCAAACGAAAAATGTCCACACCATTCCGCAACACTGTGGACAAGGTGGTTGATAATGTTTTTCCAAAACTGAACCCAAAGTTAAGAGAGACTACCACTCCTGAAGACACAGAAGATGATGATTATGAGGACACGTATGACTTTAGTGCCTACACCAGCGAGGCTACAGCCAATTTCCTGGATAGTAGTGAGAATGAGAGGAATCCCTATGCCCGTAGCTACTTCATACGCAGACAGAGGGGTTCTTTTGTTAAAGAAGATCCTGCACCTGCTGCTGATGTCGGACATTTTGAAAAGAACGCTACTCAGGCTGACCACCATTTTGAAAAGACTGAAGTCAAGGAGGGGGAGTATGACAGCGATGACATACAGAAGCTTATCATCAAAGAGGAGTGTATAGAAAGCTCAGTGTGTGACGATTCTCCGGAGTCACccaccaccaccaaaacacaCAACCAAAGTCTCTCCTATGAGTATGACGTCTCCCCTCCATTTGGGTCAGAAAGAAAGTCCTGCCCCTATTGTCCTGCTGTGTTTGAGTCTGGGGTGGGCTTGTCCAATCACGTGCGAGGGCACCTGCACAGGGTGGGGCTGAGTTATGATGCTCGCCACGTGGTGTCACCTGAGCAGGTAGCTTCACAGGACCGACAGCCACGCATACGCAGGAAGATCCCCTCTGTGGCACGGAGGATCAAAAAAGCTGAGAAGCCGGAGTCTCAGGCGGAGCACACCTGTCCCTTGTGCTGTGGCTGGTTCGACACCAACACGGGCCTCTCCAATCATGTGAGGGGACATCTAAAGCGGATAGGGAAGACCAGCACCACCAGCACCAgtaagagtccagtgtgtatccTTAATGAGCTGCTACAGGATGAGCAGGAACACCAGAACATCCTCCAGACCCTCAACAGGAAGCAGTTCCTCTCTCGACCAATCATCTCCCAGAAGTTCATCGGGAGTGATGGGCTCTTCCTGACACCCACAGGGTTCCCAGTGAAGATCCAACATGGCTGCCAGCCAGGCCAGGATGGCAATTCCACATCATGGGGGCCCAGTGCAACTACACCCAGGCAGGAGGAAGTTAAGGGAGAGGAGTTATTTTCTGAAAGGAAGAGTATAGAGatACGAGGGGTCAGGGAACCTTCCCAGGGCACTTTAGTAGAGCTGCTGAGGAAGAGGAAGTTGGACAAGGAGCAGGGGCAGCTGAGGGATAACAGCAGATCGTATGATACAGATAGGAATCACTTTACTGTGACCAAAGAGGGGTTTGAGGAGGGACAGAACCAACAGGCCAGCAATCTGGAACCACACTGGGCCCAAGAGAGAAATGAATCTAATAAGAAGATGTGCATTCACTGTAACACAACCTTCCCCAGTGCTGTTAGCTTGTCCAATCATCTTCGCGCTTACGCACGCAGGAAGAGGGTTGCCATGTTGGAAGGAACAACCTATTCCTGTATACAGAAGAAGCCTAGGTTGAGGGCTGGACCAAAGAAGAAACTATTCTCAGCTCTCCCACCTGCTGTTGAGGAGATGTACAGACTCACCTGCAGATTCTGTGACCTGGTCTTCCAGGGTCCTCTGTCCGTCCAGGAGGATTGGATCAAGCACTTACAAAGACACCTCATGCACACCAGTGTCCCTCATACAGGGGCTGGCATGGTAGAGGTCCTGGGACTACACAAAGAGATGTCCTCCTTTCCCCCCCAGCAGCACCCCTGTCTGGAGCAACCAATGTCCAAATTGCACCCCACAGCCCACGAGCCACTGGAGCACCATGGGCACCCCTGCTTGGAACACGCCGAAACCCACGAGCACCCTGAGCCACATGATGAGCACCCCTTGCATTATGCATATCCCTCATCCAATGAGCACCCCAGCCTGGAGCAGCACATGGCCACGCCCCCTCCGGAGCTTCTTCCAGTGGCTTCCTGAGCTAAAGGGTTGTTTACAACATTTTCACTTTAGATCTTTATCCTGCACATGTAAATATGGATAGATACATAGAAATATATAGAgataaatacaaatattctaaAGCTATACATATGTTTTTCTTAATATGCACATGGACCTACTAGCCCTTCTCTCTATTTTTTAAGACTGGtatctatactatactgtagatgATAAATCTTGTTACTTAGACGTATAGAAACGTTACAGAATTTACAGTTACAGAGAACTCTACTTGAGATGCAAAAAGGCCAACAACATTCGCTGAAGCTAGAACAGCTGTCAGTTCAGAACCTTGTATCTCAATTTTTTTTTACCTAATGTATGCAGTGCAGTTACCTCTTCTACGTTTAAGTGAAGTTTTACTTACAGATAATCTTGCCATATTGCAACATGGACGCATGTTAAATGTGTCTTCTTGTTTCCTTCTTTACACTGTTTAGCAGTCAGTCAGAACTTTGAACCCAATaccaatggggcggcaggtagtggttggaccgttgggccagtaaccgaaaggttgctagattgaatccctgagctgacaaggtaaaaatctgtcgttctgcccctgaacaaggcagttaacccaatgttcctagtcagtcattgtaaataagaatttgttcttaattgacttgcctagttaaataaaaataaaccaaAAGAGACAACTCACACCTCAACATTCTGATAATAGTAAATGCTTTGCCCATTACTTTGAGGCTTTTCTCATTGACAAACATTTATGGAGACAGCGTGATAAGATTTAAATTTAcacaatatgtacagtaccagtcaaaagtttggacacacctactccttcaagggtttttctttatttgtactcttttctacattgtagaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500060 lncRNA downstream 7025 77174511 ~ 77174889 (-) True G441828
TU500013 lncRNA downstream 12104 77169450 ~ 77169810 (-) True G441790
TU499988 lncRNA downstream 27523 77154090 ~ 77154391 (-) True G441765
TU499986 lncRNA downstream 30171 77151398 ~ 77151743 (-) True G441763
TU499926 lncRNA downstream 95525 77086099 ~ 77086389 (-) True G441703
TU500129 lncRNA upstream 32488 77248270 ~ 77248498 (-) True G441895
TU500246 lncRNA upstream 39401 77255183 ~ 77255532 (-) True G442012
TU500247 lncRNA upstream 39944 77255726 ~ 77255976 (-) True G442013
TU500257 lncRNA upstream 54078 77269860 ~ 77271213 (-) False G442021
TU500255 lncRNA upstream 54165 77269947 ~ 77271649 (-) False G442021
XM_021604409.2 mRNA downstream 185638 76991991 ~ 76996276 (-) True LOC110524596
XM_021604396.2 mRNA downstream 592934 76587005 ~ 76588980 (-) True glrx2
XM_021604397.2 mRNA downstream 592937 76587005 ~ 76588977 (-) False glrx2
XM_021604395.2 mRNA downstream 593007 76587005 ~ 76588907 (-) False glrx2
XM_021604398.2 mRNA downstream 593053 76587005 ~ 76588861 (-) False glrx2
XM_021604412.2 mRNA upstream 61123 77276905 ~ 77402910 (-) False LOC110524600
XM_021604413.2 mRNA upstream 61123 77276905 ~ 77402910 (-) True LOC110524600
XM_021604427.2 mRNA upstream 299336 77515118 ~ 77527861 (-) True LOC110524605
XM_021604430.2 mRNA upstream 333078 77548860 ~ 77556868 (-) False LOC110524607
XM_036978448.1 mRNA upstream 342540 77558322 ~ 77594883 (-) False LOC110524608
TU499853 other downstream 160539 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 279143 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 591544 76586458 ~ 76590370 (-) True G441168
TU497923 other downstream 1606345 75571249 ~ 75575569 (-) True G439788
TU497719 other downstream 1916511 75263473 ~ 75265403 (-) True G439594
TU500354 other upstream 190960 77406742 ~ 77407135 (-) True G442115
TU500657 other upstream 407517 77623299 ~ 77627214 (-) False G442381
TU501172 other upstream 865963 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 1748849 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 2007358 79223140 ~ 79237461 (-) False LOC110524635

Expression Profile