RNA id: TCONS_00031161


Basic Information

Item Value
RNA id TCONS_00031161
length 1101
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_015602
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 33796207 ~ 33821163 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTTCTGGTGAAGACTGGAATTCTAGTGAGCTTCTGAATGGCTCTTTCAGAAACTCTTCTATGGAGGATTCGGAGGACGGGGAGCACCCGTTCCTGACAGATGCATGGCTTGTGCcgctctttttctctctcatCATGCTAGTGGGGCTGATCGGAAACTCACTGGTGATTTATGTCATCTCCAAACACAGACAGATGAGGACGGCTACTAACTTTTACATAGCTAACTTGGCTGCCACCGACATCATTTTTCTGCTGTGCTGTGTGCCGTTCACCGCCACCCTCTACCCTCTGCCCGGCTGGATATTTGGGGACTTCATGTGCAAATTTGTTGCTTTTCTTCAACAGGTGACGGTACAGGCGACGTGCATCACTCTCACGGCCATGAGTGGAGACCGATGTTATGTGACTGTGTATCCTCTCAAATCCCTGCACCATCGCACCCCTCGTGTTGCTATGATTGTTAGCATATGCATATGGATTGGTTCCTTCATTCTTTCCATACCGATCTTCCTGTACCAGAGGCTGGAAGACGGCTATTGGTATGGACCAAGAAAATACTGCATGGAAAGGTTTCCATCAAAGACCCATGAGAAAGCTTTCATCCTCTATCAGTTCATAGCTGTGTATCTACTGCCTGTCATTACCATCTCTTTCTGTTATTCCTTCATGTTGAAAAGAGTGGGACAGGCTTCGGTGGAACCAGTGGATAACAACCATCAGGTCCATCTTCTCTCAGAGAGAACCATCTCCATCCGGAGCAAGATATCCAAAATGGTAGTGGTCATAGTTGTCCTCTTCACCATCTGCTGGGGCCCCATTCAGATCTTTGTTCTGTTCCAATCCTTCTATCCTAACTTCAAGGCCAACTACGCAACATATAAGATCAAAACGTGGGCCAACTGCATGTCCTATGCCAATTCCTCTATCAACCCCATTGTCTACGGCTTTATGGGCGCCAGCTTCCGCAAGTCTTTCAGGAAGACCTTTCCCTTCCTCTTCAGACACAAAGTGCGGGACAGCAGCGTGGCCTCCCGCACGGCCAATGCAGAAATCAAATTTGTAGCCACAGAGGAAAGCAACACTGAGAGGAAATGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008188 neuropeptide receptor activity molecular_function
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-521 Enables neuropeptide receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Located in cell surface and cytoplasm. Is expressed in brain; fat cell; head; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in central precocious puberty 1; hypogonadism; and hypogonadotropic hypogonadism 8 with or without anosmia. Orthologous to human KISS1R (KISS1 receptor).

Ensembl:

ensembl_id ENSDART00000124647

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033273 lncRNA upstream 24335 33759617 ~ 33771872 (+) True XLOC_015601
TCONS_00033599 lncRNA upstream 115071 33680073 ~ 33681136 (+) True XLOC_015593
TCONS_00033598 lncRNA upstream 328037 33467112 ~ 33468170 (+) True XLOC_015590
TCONS_00033597 lncRNA upstream 560950 33222962 ~ 33235257 (+) True XLOC_015586
TCONS_00033596 lncRNA upstream 766779 33001203 ~ 33029428 (+) False XLOC_015584
TCONS_00033274 lncRNA downstream 76307 33897470 ~ 33898732 (+) True XLOC_015603
TCONS_00033600 lncRNA downstream 78389 33899552 ~ 33908702 (+) True XLOC_015604
TCONS_00033601 lncRNA downstream 359982 34181145 ~ 34208131 (+) False XLOC_015610
TCONS_00033602 lncRNA downstream 359982 34181145 ~ 34356669 (+) True XLOC_015610
TCONS_00033275 lncRNA downstream 618282 34439445 ~ 34439731 (+) True XLOC_015611
TCONS_00031159 mRNA upstream 42825 33751490 ~ 33753382 (+) True XLOC_015599
TCONS_00031158 mRNA upstream 45917 33747509 ~ 33750290 (+) True XLOC_015598
TCONS_00031157 mRNA upstream 67411 33726862 ~ 33728796 (+) True XLOC_015597
TCONS_00031156 mRNA upstream 70879 33722547 ~ 33725328 (+) True XLOC_015596
TCONS_00031155 mRNA upstream 96896 33697340 ~ 33699311 (+) True XLOC_015595
TCONS_00031164 mRNA downstream 105443 33926606 ~ 33952021 (+) False XLOC_015607
TCONS_00031165 mRNA downstream 105748 33926911 ~ 33950208 (+) False XLOC_015607
TCONS_00031166 mRNA downstream 105766 33926929 ~ 33939684 (+) False XLOC_015607
TCONS_00031168 mRNA downstream 290937 34112100 ~ 34126291 (+) False XLOC_015608
TCONS_00031169 mRNA downstream 290954 34112117 ~ 34126879 (+) True XLOC_015608
TCONS_00031160 other upstream 38639 33756378 ~ 33757568 (+) True XLOC_015600
TCONS_00031140 other upstream 595839 33189584 ~ 33200368 (+) False XLOC_015585
TCONS_00031127 other upstream 968954 32826503 ~ 32827253 (+) True XLOC_015579
TCONS_00031124 other upstream 1005321 32790363 ~ 32790886 (+) True XLOC_015577
TCONS_00031122 other upstream 1035875 32758663 ~ 32760332 (+) True XLOC_015576
TCONS_00031162 other downstream 79272 33900435 ~ 33900512 (+) True XLOC_015605
TCONS_00031163 other downstream 81162 33902325 ~ 33902455 (+) True XLOC_015606
TCONS_00031167 other downstream 106056 33927219 ~ 33933001 (+) True XLOC_015607
TCONS_00031194 other downstream 2010166 35831329 ~ 35831445 (+) True XLOC_015626
TCONS_00031197 other downstream 2169974 35991137 ~ 35998576 (+) False XLOC_015629

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_12984968_12997831.mRNA True 1824 mRNA 0.46 9 CI01000004 12984968 ~ 12998063 (+)