RNA id: TCONS_00031158



Basic Information


Item Value
RNA id TCONS_00031158
length 1067
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_015598
representative True

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 33747509 ~ 33750290 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AATACACGAAGACTATCTCTTTGATAGATCGGTTTTTCAAAGTTCTCGTTTTTTAGActatttaatcttttaaaatgtttacattactCGGAGTAATTGCTTTAGTCCTGCGAGAAAGGACCGTCAACAAAACCCGCTCAGATGGGGAAGAACTCGTGGAGAAAAACACTCCATCCACGATGACCAGTGATGgtCGAGAAATTGATGGCAGGACCGAACACCTGTCATCAGAGGAACCAAAGACCAGTGGCTGTCCAGTCCATGTTGATGGCCACAGTGAGGTCCTCCTTTCTCCCAGCACTGCACCAACCCTTCAAACTCCAGACCATGCTGCAGCTCAAAATATTGATGACGTCCCTACAGTCTGTGCCATGTCCGACTGTAGTGAGGATGATGTCCTTCAAGCTGCAGTACCTTTGCTAGCGGACTTGTGTGCACGTGTTCTTCAGGACACTGAGCCACAGTCATGCCAGCAGCAGGATATGGAGAAAACTATAACTGGTCGAGAAATTGATGGCAGGACTGAATACCTGTCATCGGAGGAACCAAACACCAGTGGCTGTCCAGTCCATGTTGATGGCCACAGTGAGGTCCTCCTTTCTCCCAGCACCGCACCGACCCTTCAAACTCCAGACCATGCTGCAGCTCAAAATATTGATGACGTCCCTACAGTCTGTGCCATGTCCGACTGTAGTGAGGATGATGTCTTTCAAGCTGCAGTGCCTTTGCTAGCGGACTTGTGTGCACGTGTTCTTCAGGACACTGAGCCACAGTCATGCCAGCAGCAGGATATGGAGAAAACTATAACTGgtcGAGATATTAATGGCAGGACTGAACACCTGTCAGCGGAGGAACCAAACACTAGTGGCTGTCCAGTACATGTTGATGACCACAGTGAAGTCCTCCATTCTCCCAGCACTGCACCAACCCTTCAAATCTCAGACCATGCTGCAGCTCAAAGTATTGACAACGTCCCTACAGCCTGTGCTACGTCCGACTCTAGTGAGGATGATGTCCTTCAAGCTGCAGTGCCTTCGTTAGCTGACTTGTGTGAACGTGTTTTTGAG

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000134187

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00033599 lncRNA upstream 66373 33680073 ~ 33681136 (+) True XLOC_015593
TCONS_00033598 lncRNA upstream 279339 33467112 ~ 33468170 (+) True XLOC_015590
TCONS_00033597 lncRNA upstream 512252 33222962 ~ 33235257 (+) True XLOC_015586
TCONS_00033596 lncRNA upstream 718081 33001203 ~ 33029428 (+) False XLOC_015584
TCONS_00033273 lncRNA downstream 9327 33759617 ~ 33771872 (+) True XLOC_015601
TCONS_00033274 lncRNA downstream 147180 33897470 ~ 33898732 (+) True XLOC_015603
TCONS_00033600 lncRNA downstream 149262 33899552 ~ 33908702 (+) True XLOC_015604
TCONS_00033601 lncRNA downstream 430855 34181145 ~ 34208131 (+) False XLOC_015610
TCONS_00033602 lncRNA downstream 430855 34181145 ~ 34356669 (+) True XLOC_015610
TCONS_00031157 mRNA upstream 18713 33726862 ~ 33728796 (+) True XLOC_015597
TCONS_00031156 mRNA upstream 22181 33722547 ~ 33725328 (+) True XLOC_015596
TCONS_00031155 mRNA upstream 48198 33697340 ~ 33699311 (+) True XLOC_015595
TCONS_00031153 mRNA upstream 49051 33664387 ~ 33698458 (+) False XLOC_015592
TCONS_00031159 mRNA downstream 1200 33751490 ~ 33753382 (+) True XLOC_015599
TCONS_00031161 mRNA downstream 45917 33796207 ~ 33821163 (+) True XLOC_015602
TCONS_00031164 mRNA downstream 176316 33926606 ~ 33952021 (+) False XLOC_015607
TCONS_00031165 mRNA downstream 176621 33926911 ~ 33950208 (+) False XLOC_015607
TCONS_00031166 mRNA downstream 176639 33926929 ~ 33939684 (+) False XLOC_015607
TCONS_00031140 other upstream 547141 33189584 ~ 33200368 (+) False XLOC_015585
TCONS_00031127 other upstream 920256 32826503 ~ 32827253 (+) True XLOC_015579
TCONS_00031124 other upstream 956623 32790363 ~ 32790886 (+) True XLOC_015577
TCONS_00031122 other upstream 987177 32758663 ~ 32760332 (+) True XLOC_015576
TCONS_00031120 other upstream 1040098 32701851 ~ 32707411 (+) True XLOC_015574
TCONS_00031160 other downstream 6088 33756378 ~ 33757568 (+) True XLOC_015600
TCONS_00031162 other downstream 150145 33900435 ~ 33900512 (+) True XLOC_015605
TCONS_00031163 other downstream 152035 33902325 ~ 33902455 (+) True XLOC_015606
TCONS_00031167 other downstream 176929 33927219 ~ 33933001 (+) True XLOC_015607
TCONS_00031194 other downstream 2081039 35831329 ~ 35831445 (+) True XLOC_015626

Expression Profile


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