RNA id: TU424439


Basic Information

Item Value
RNA id TU424439
length 231
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G373317
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17265166 ~ 17265396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gattatgtccgtaaaatgtatatagtgtgtataagctagaagtagaagcctaagtgttgttgttcattagtttactccaattaggggaggggtggtagggtaaaaaaaaagatatttcaaagagatgtgtgtgtatatagtaccagtcaaaatgttggacacacctactcattccagggttcttctacattgtataataatagggaagacatcaaaactatgaaataacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424416 lncRNA upstream 18739 17245912 ~ 17246427 (+) True G373294
TU424415 lncRNA upstream 19364 17245385 ~ 17245802 (+) True G373293
TU424248 lncRNA upstream 27761 17236769 ~ 17237405 (+) True G373157
TU424234 lncRNA upstream 34886 17172353 ~ 17230280 (+) True G373144
TU424233 lncRNA upstream 93549 17171400 ~ 17171617 (+) True G373143
TU424476 lncRNA downstream 25139 17290535 ~ 17290797 (+) True G373353
TU424487 lncRNA downstream 33567 17298963 ~ 17299314 (+) True G373364
TU424510 lncRNA downstream 64209 17329605 ~ 17329776 (+) True G373387
TU424535 lncRNA downstream 74701 17340097 ~ 17340358 (+) True G373412
TU424547 lncRNA downstream 82249 17347645 ~ 17347862 (+) True G373424
XM_036976967.1 mRNA upstream 22255 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA upstream 22255 17235815 ~ 17242911 (+) True LOC110523353
XM_021601976.2 mRNA upstream 47980 17191416 ~ 17217186 (+) False LOC110523352
XR_005051669.1 mRNA downstream 462125 17727521 ~ 17775607 (+) False tnpo1
XM_036976968.1 mRNA downstream 462440 17727836 ~ 17778710 (+) False tnpo1
XM_036976969.1 mRNA downstream 526464 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 526464 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 526464 17791860 ~ 17871592 (+) False LOC110523357
TU423600 other upstream 382981 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 382981 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 526666 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1044233 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1470044 15791559 ~ 15795122 (+) False G371615
TU424889 other downstream 438717 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 802047 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2717865 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 3326084 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3478188 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile