RNA id: TU425700


Basic Information

Item Value
RNA id TU425700
length 3302
lncRNA type antisense_over
GC content 0.44
exon number 4
gene id G374438
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18383114 ~ 18386763 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgaaaaaaaatctgtcacaTGTACAAACAATGTTATAAAAAATTGAAACATGACAGAAAAAATGAAAGCAAATGCACATTGAAAGTGTTTATAAAGAAGTTTCCATCATTTTGGTGAATGCCTACAGCAAGCCAGTCAGGGAGAACACACTACACATAAGCGAGCTGAATCCCAATAAGgcgggaagagagagggggcaaaaagagaaatgagagagggaaAATATGACACTGAACAATCACTTGTAAATTGGAGGGGCACTCAATGTTGACTGTTGCCAGGGTAATTTATGTTCTAAAAGGAACCCTCTTATCTGATTGGTGAGGAGAAAGGTGCAGTGTTCTGTGGGCGGGTTGGTTGGTTAGGGGGTCGACATCAAGGAGCCAATGAGTTCTCCACAGAATTCCTTAAACAGTTTGTGCTTTTGTAGCCCTAGGAGGTGGGAGTTGGGCTGGGAGGTGGGAGTTGGGCTGGGAGGTGGGAGTTGGGCTGGGAGGAGGGCTGGGAGCTGGGACATGGGCTGGTAGCTGGGAGGTGGGCTGGGAGGTGGGAGTTGGGCTGGGAGGAGGGCTGGGAGGTGGAAGTTGGGCTGTGAGGAGGGCTGTGAGGTGGAAGTTGGGCTGTGAGGAGGGCTGGGAGGTGGAAGTTGGGCTGGGAGGTGGAAGTTGGGCTGTGAGGAGGGCTGGGAGGTGGAAGTTGGGCTGTGAGGAGGGCTGTGAGGTGGAAGTTGGGCTGGGAGGTGGAAGTTGGGCTGTGAGGTGGAAGTTGGGCTGGGAGGAGGGCTGGGAGGTGGAAGTTGGGCTGGGAGGAGGGCTGGGAGGTTTGGGTGGCTCAAATAATCAAACAGGAATGTGGAATACAAGGGATTGAGGCCATTCACTGAATCCATCCAGAACACATCCTGCCTGGGAAAATCTATACAACTGTTAGCTTTTATGTTGACCTTGACAATGATTTCATCATGCTAAACTGTACATGTCAATATTTTGGCCacccagacagacaaacagacaaaaacATCCAGAAATCAACTACTGGTACAAAACGGTGGATGCAAGTATTTAAGACATTCTCTTTGTTGGTCTTTGGAACTCTCCCCTGTCATATTCCCTCCCATACATCAGTGCCCATATGGTGAAGAGCACTGCGGTGTCTGCCTGTCCTTTAAATTTACAGGATTCAGTGAACTACacattctcttcctcctcctcatcttcacacTCACACTACACTAAAATGTCAGTATTCTGACTTGAGATCTACATGCTTAGCTTGTATTTTTCATGCAAGTCTCCCGTTGACATTGATAAATGATGTACACAGAAGCTACATACGCTCATCTCAAGTCAGAATATTGAATATTTGAGTGTGGCACTTAAAATAAAGCAGATATGCCTCATAGCAGAGTCAACATTTAAATGTGAGATGTTACTCTACCCAGAGTCCACCTCTAAAACAAACACATTCCCACCCACTGGCCACTTACACTCTAGGTAATCTAAGTGTCCATCCGTATACTGACTCCTAACCCCAGACCTCTGACCTGTTCACCTCACTGACCATATGGTTTGAACAGGTTGCACTTTGGGAGAAACTGAACTGTGCAAAAAAAAGCAGACCAAAGGATAAACAATAAAATAGAGCATCTATAACAAGGGTCATGCATGATTTACCCTTAAAAAGATCTACATTCATTTACCTGGAAATGAATGCAGGCAGAGAAACAATAAATAAAGTAAAGTCCTTTTTGTATAAATTAAGACTTATGAAACATGATACACTGGAGCAAGATAAGACAAGAATGTATTACGTTTCAGTTTTGGTTAGGAAGTTAACAAGATGCTCTTGGCCAGAGAAGTTCATCATGCCAATCATACTTGAGTCCCCATATCCATGGTACATGCTCTGAAGAGTTCAGAATAATCTTCTAGGCAAAGTAGAAAATGTATCCACCAGTGATCCAACAAAACAATACTGCTCATTGGAATTACTTCGGAACAAACAGTAAATCGTGTGCAAGAGCAAACCCTTCAGGGCTGGATGCAATCTGTAAAGAAAGCTTAACATTTTAAAAGGCcctttccgattgagccgacatatgcagctattaccgtgaatgcagtctccgcgaaCATGGAAACATTGCCTTtcaatttcaatcacgctgtaatcCTGATATTCAGCACTacagattgaatcgagcccttagTGTCCATCTGAGCTTGAATGAGCATTTTCTTCAGTTCTGTGTTGCACTGTCCACTTCTCTTCTTTGATTATTGTTATTTTGGATCAGGAGAGTGTAGTGACCTACAGCAAGAATGGGATTGGGAGAGGCAGGGCGAAAGGGGGTGGTAACTTTACATCGGTAGACATGTCAGGACATGaccctccttcaccctctccacaACTCCCCTCTCAGACTCATCTGGTGCTGGCACTTCAAGTCCTCACAACACGTAGTGTCACAGCAAACTGCCAAAGAGGAACTTCCAACACCACTTACAACGTTTTAAACCCCAAACGCCTACTAGGTGAtggggacaggaagaggaggggaggaggttgtcaatctctgtctttctctctcctcttccttggCGAGGACAGAACGACTGGAACAAGAAGAGTCTAAAGTCTCAGATACACTAGGGAGAGAACTGTTTATGGATCAGCTGCTCATAATCAAGCTGAAGAGGAGTCTCtggtcactctcctctctcccctcatatGTGTCCTATGTCCAAACAGGTGCTCCTTCATACTATTACATTAAAGGCCCTGTGCAGAGAATGTTtcctcttcttcatttttcaaatTTCATATCACAGAATTATCAGAGTGAGAAGAGCAAAGACATAGTCCGTAGTACAAGTATTTCATGATTGAACGGAAAGAAATCcaggctgtgtgagtgtgtgactgaTATGTTGATGGGTCTTTCATGGAAGGCTGAGACGCACAGGCGCGGTATGCCGATAGTACACTGGGATTAGGGGGTTGTTGGATCTTACAGTACAAGCAGCAGGTTGTTGGGTTTGTTTGCATGAATAACGTCCAAACCTCTCTCTCAGAAACGATATGACATCATTGACATCATTCTGTGTACAAGGTCCTCTCAGGAGCATTGATGGTTCTTTAAACGTCTGTAAACTCACAGTAGCATTTGGGTGGATCGTGTGTTTTCACACTTATACAATGGTTCAGTTTTTTTCATGAAGAAAATTAGAAAGTCTTATTTTTTTATTGCACAGACAGGAAGTTAAAGAGTGTGATTCTATCTTCACAGCTGGAATCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425638 lncRNA upstream 98689 18283987 ~ 18284472 (+) True G374389
TU425620 lncRNA upstream 122630 18260273 ~ 18260531 (+) True G374372
TU425615 lncRNA upstream 126212 18256524 ~ 18256949 (+) True G374367
TU425609 lncRNA upstream 134873 18248052 ~ 18248288 (+) True G374361
TU425607 lncRNA upstream 136458 18246380 ~ 18246703 (+) True G374359
TU425726 lncRNA downstream 55457 18442220 ~ 18442478 (+) True G374463
TU425755 lncRNA downstream 94568 18481331 ~ 18481568 (+) True G374488
TU425757 lncRNA downstream 97505 18484268 ~ 18484500 (+) True G374490
TU425758 lncRNA downstream 99622 18486385 ~ 18486613 (+) True G374491
TU425759 lncRNA downstream 100273 18487036 ~ 18487244 (+) True G374492
XM_036976985.1 mRNA upstream 206126 18067350 ~ 18177035 (+) False arhgef28a
XM_036976986.1 mRNA upstream 206126 18067350 ~ 18177035 (+) False arhgef28a
XM_036976987.1 mRNA upstream 206126 18067350 ~ 18177035 (+) False arhgef28a
XM_036976988.1 mRNA upstream 206126 18067350 ~ 18177035 (+) False arhgef28a
XM_021601990.2 mRNA upstream 335530 18040727 ~ 18047631 (+) True btf3
XR_002473438.2 mRNA downstream 9565 18396328 ~ 18410126 (+) False LOC110523365
XM_021601996.2 mRNA downstream 9568 18396331 ~ 18410126 (+) False LOC110523365
XM_036976990.1 mRNA downstream 9892 18396655 ~ 18410126 (+) True LOC110523365
XM_021601997.2 mRNA downstream 29011 18415774 ~ 18422258 (+) True LOC110523366
XM_021602001.2 mRNA downstream 100857 18487620 ~ 18506142 (+) False egfl7
TU425343 other upstream 299796 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 675404 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 1500976 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 1500976 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 1644661 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 1596498 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2204717 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2356821 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 2444495 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 2721406 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile