RNA id: TU428502


Basic Information

Item Value
RNA id TU428502
length 254
lncRNA type intronic
GC content 0.44
exon number 1
gene id G376983
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20521212 ~ 20521465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agATAAAACAacagatatcaaatcaaatttatttataaagcccttcttagatcagctgatatctcaaaatgatggacagaaacccagcctaaaaccccaaacagcaagaaatgcaggtgcagaagcacggtggctaggaaatactccctagaaaggccaaaacctaggaacaaacctagagaggaaccaggctatgaggggtggccagtcctcttctggctgtgccgggtggagattataacagaacatggcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428497 lncRNA upstream 6270 20514741 ~ 20514942 (+) True G376978
TU428495 lncRNA upstream 8083 20512803 ~ 20513129 (+) True G376976
TU428491 lncRNA upstream 16879 20504021 ~ 20504333 (+) True G376972
TU428457 lncRNA upstream 59872 20461004 ~ 20461340 (+) True G376938
TU428385 lncRNA upstream 99482 20420930 ~ 20421730 (+) True G376867
TU428518 lncRNA downstream 45827 20567292 ~ 20567543 (+) True G376999
TU428524 lncRNA downstream 50942 20572407 ~ 20573061 (+) True G377004
TU428580 lncRNA downstream 117733 20639198 ~ 20639463 (+) True G377057
TU428586 lncRNA downstream 126443 20647908 ~ 20648189 (+) True G377062
TU428587 lncRNA downstream 127572 20649037 ~ 20649329 (+) True G377063
XM_021602055.2 mRNA upstream 107056 20390530 ~ 20414156 (+) True LOC110523393
XM_036977015.1 mRNA upstream 139593 20051393 ~ 20381619 (+) False LOC110523391
XM_036977018.1 mRNA downstream 14671 20536136 ~ 20759255 (+) False LOC110522816
XM_036977019.1 mRNA downstream 14671 20536136 ~ 20759255 (+) False LOC110522816
XM_036977022.1 mRNA downstream 124806 20646271 ~ 20759255 (+) False LOC110522816
XM_036977021.1 mRNA downstream 149660 20671125 ~ 20759255 (+) False LOC110522816
XM_036977023.1 mRNA downstream 309646 20831111 ~ 20842676 (+) False LOC110522817
TU427802 other upstream 537364 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2437847 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2813455 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 3639027 16870434 ~ 16882185 (+) False G372618
TU428545 other downstream 70015 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 222119 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 309793 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 586704 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1651070 22172535 ~ 22231920 (+) False G378660

Expression Profile