RNA id: XM_036977018.1


Basic Information

Item Value
RNA id XM_036977018.1
length 4711
RNA type mRNA
GC content 0.55
exon number 16
gene id LOC110522816
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20508074 ~ 20759255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactcacgcacgcaggGGGAAAGTGAGGGTGACAGTGTgtatgagaaagaaagagagaaagagagtgacaaAAGCAGTTAGTTCCATGGACTGAAAGTGGAAAACTAgcaagagggaaggagggagggaaacaaAAGTGTTTGAGAGAAAGAGATCTTCTCCCCTCTGTTCTGGTGGCTGTTTTCTTTGCTGTGAGCCTGAGAAGGGGGAGGACCTAAACTCAGCGCTCAGAGTCAATACTGGACCCCTACTGGACTCCAATGCCCTTACTGGAGTCCACTGCGCAACCCACAaacacgctctcacacacacacacgcatactctCTCAcacggtgacacacacacacgctccctcaGACCCCTGCAGCTACTGCAGAACggagcagagggagaaacagagaacgagagggagaaaggaggggaaGTTGTTCGTTGTTACTACTTGTTGCTGATTGCTTTCCGTGCGGAGCGTTGAGGATGATATTCCCTGTCTTTTCCTAGCGGGAGCTTGTCTGAGAATCGCCCCCTGAGAGAACAGGCCGCAGACGGAGTATGCCCGGTAGCGCCCCGGACAAGACCATACCACCCATGGAACCTGCCGCCGCAGCCACGCCCTTCAGAGTCACTGGCTTTCTGAGTCGGAGGCTGAAGGGTTCTATAAAGCGTACTAAGAGCCAGCCGAAACTGGACCGTAACTCCAGCTTCAGACACATCCTGCCTGGATTCAGGAGTGTGGACAATGAGAGTTCTAATCTGATGCCGAGGCTGAAGGAGTCTCGCAGCCACGAGTCGTTGCTCAGCCCCAGTAGTGCTGTGGAGGCCGTGGACCTCAGCATGGAGGACGAGGTGCTCATCAAACCTGTTCACAGCTCCATCCTCGGACAGGACTACTGCTTCCAGGTCACCACCTCAACAGGAAGTAAATGTTTCTCCTGTCGATCTTCATCAGAGAGGGACAAGTGGATGGAGAACCTGAGGAGAGCCGTCCACCCCAACAAGGACAACAGCCGTCGGGTGGAGAACATGCTGAAGCTGTGGATCATCGAAGCCAAGGACATTCCTGCCAAGAAGAAGTACTTCTGCGAGCTGTGTCTGGACGACACCCTGTACGCCCGCACCACCTGCAAGCTCAAGACCGACAACGTCTTCTGGGGCGAGCACTTTGAGTTCAACAACCTCCCGGCTGCCAAGAGCATCacggtccacctctacaaggacTCGGACaagaaaaagaaaaaagacaagaacAATTACATCGGATTGGTCAACATCCCAGTCGCCGCGGTGACGGGAAGGCAGTTCATGGAGAAGTGGTACCCGGTAAGCACTCCGACGCCCAACAAGGGGAAGACGCCAGGGCCCATGATTCGGATCAAGGCCCGCTACCAGAGCATGAACATCCTGCCTATGGAGATGTATAAGGAGTTTGCAGAGTACACCACCAATAACTACATGTTGCTGTGCTCCGTGCTGGAGCCTGGCATCAGTGTGAAGAACAAGGAGGAGATGGCTTCTGCACTGGTCCATATTCTACAGAGCACCGGCAAGGCCAAGGACTTCCTGACAGACCTGATGATGTCAGAGGTGGACCGGTGTGGGGAGAACGAGCACCTGATCTTCCGAGAGAACACGCTGGCCACCAAGGCTATAGAGGAGTACCTCAAACTTGTGGGGCAGAAGTACCTACAGGATGCACTCGGTGAGTTTATCAAGGCGTTGTATGAGTCAGATGAGAACTGTGAGGTGGACCCGTCCAAGTGTTCGTCCAATGACCTGCAGGAGCACCAGAGCAACCTGAAGATGTGCTGTGAGCTGGCCTTCTGCAAGATCATCAACTCCTACTGTGTGTTTCCACGGGAACTCAAGGAGGTGTTTGCATCGTGGCGACAGGAGTGCAGTAGCCGGGGGCGACCGGACATCAGCGAGCGTCTGATCAGTGCGTCTCTGTTCCTGCGTTTCCTGTGTCCGGCCGTTATGTCCCCGTCGCTTTTCAACCTGATGCAGGAATACCCTGATGACCGCaccgcacgcacactcacactcatCGCCAAGGTCACGCAGAACCTGGCCAACTTCgccaagtTTGGCAGTAAGGAGGAGTACATGTCCTTTATGAACCAGTTCCTGGAACATGAGTGGACCAACATGCAGCGCTTCCTGCTGGAGATCTCTAACCCAGAGACCATCTCTAACACTGCAGGGTTCGAAGGTTACATAGACCTGGGACGGGAGCTGTCCACCCTGCACAACCTGCTGTCAGAGGTCGTCTCTACCATGGACCAGAGCTCCGCCTCCAAGCTAGGCCCCCTACCCAGGATCCTCCGGGATGTGAACACAGCGCTGAACAACCCGTCCAGCATGACCATGAGCATGACCGCTCCGTCCTCCTCTGACCGTATGGGGTCACCGCCCAATGTAGGGGCAGAATGCAGCATCTCCACCGGCCTACAGAAGATGGTCATCGACAATGACCTTTCAGGgttggtGGACTTCACCCGGTTACCCTCCCCCACCCCGGAGAACAAGGAACTTTTCTTTGTCACCAGGAACGCTGGGATCCAGCCCACCCCGGCCCGCAGCTCTAGCTACTCTGAATCCAATGAGCCCGACCTGGGCATAGCCAACGGCAGCAAGAGCCTGTCCATGGTGGACCTCCAGGACCCCCGCAGCTTAGAGAGTGGCCCAGGCCCTGGCCCGTCAGACGGCCTGGGAGAGGGCATCGTTCCTGGGGGAGTGTGGTCGGCCCGAACCCCCCAGGGGAACATCACTGGAGGTCCTACTCTGAGAAGGCCCGTCCAGACCCCCACCACCCCCGGATCGGAGAGCGCCCCTGGCAGACCTGCTCAGCTTCTAGCCCCCCTGTCCTTCCAGAACCCCGTCTACCAGATGGCGGCAGGGCTGCCCTTGTCGCCGCGGGGCCTGGTCGACTCGGGTTCTGAGGGCCACAGCTCCCACAGTTCCCATAGCAACAATGAGGATgggccaggaggaggaggggggatacaCAACTCCTTCCTGAACCACGGAGTAGGAGGTGGGGGGAGCAGCGTGGAGGAGTATGCCCGTCGTTCGGGGGAGTTCATAGGCACGCGGAGGCAGCTGTCACTCACAGAGGCCCAGCACCAGCCCACCGTGCCCAGACAGAATAGCGCCGGCCCCCAGCGCAGGATAGACCAGCCCCCTCCACAGACCACCGTCACCAGGGGCCGCACGCCCCCAAACCTGCTCAACAGCGGGCCCTACCCGCGCCCCTCCAGCAGCAGCATGATGTCATCCCCCGACTGGCCCGGCAACGGGGCGCGGCTACGGCAACAGTCGTCGTCGTCAAAAGGAGACAGCCCAGAGAGCAAGCAGAGAGCCCAGCACAAACAGGCCCCCTCCCCAGTGAAGCCCAATGCACTGGACCGTACGGCTGCCTGGCTGTTGAATATGAATGTTCAGTATGTAGACCATGAGGGGATGGACCCCGAGTTCAGAAACAGAGAGGATCTCACTCAGGCCGAGAAGtaccAGCAGGAGATTGTGGTCCTCCAGGAGAAGCTGCGTGTGTCGGTCCAGAAGCTGGAGGAGTACGAGGCTCGTCTGAAGGGTCAGGACGACGGTGCTCAAAAGGTGCTGATGGAGTACCAGGCACGGCTGGAGGAGTCTGAGGAACGCCTGAGACGACAGCAGGATGACAAGGACCTCCAGATGAAGGGTATTATAAGCAGgttaaTGTCAGTGGAAGAGGAGCTAAAGAAAGATCACAATGACATGCAGGCTGTGGTTGACTCCAAACAGAAGATCATTGATGCACAGgaGAAACGTATAGCGTCCCTGGACACGGCCAACGCCCGTCTGATGAGTGCCCTGACCCAGCTGAAGGAGCGCTACAGCATGCAGACCCGTAACGGCATCTCCCCAACCAACCCCACCAAGCTCCAGATCACTGAGAATGGAGAGTTCAGGAACAGCAGCAACtgctagaggcagagagagagggtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgttggctggtGCTTGTAGAGGACACTTCCTTATATGGACACTACATGGTGAGGAGAATGTGAGTGGGGAGACCACTGCCAGGGGCCAAGCGAGGAGGCGGGTCTTCAGTTTGACAGACAGCAGACCAGGAAAGAGACAACGAATCAATGGACAGAGCTGAACACCAGATGGGCCCTGCAGAGGAGAAGCCGGGACAAGCTGTAGACATGAACTGAACTCTCCGTCAATCAATCGACTTGGATGTTTCCATTGGATGTATGCAGTTGCTGGGACAATTTCAGGCTCTCTTCCCTAAAGCTTGGGTCAAACCACTATATAATCAACACATTGTCTGTCAGATAGTCACCCAAAACCTCtttactctcctcttctcttcttctctgttctcctttcctctcctcttttctcttctctgttTTACTCTCCTTTCCtgacctcctctcttcttctctctgttagGAGCAGGTTACGTGGACCTTGtacaaaacaataacaaaacaatgATTTATTTAGATCTTATCTCATTCTTTTAAAAACCAAATAGGAGCTTTGAAATATTTTTTGTCCAAACTGATCTTtatttttacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428502 lncRNA upstream 14671 20521212 ~ 20521465 (+) True G376983
TU428497 lncRNA upstream 21194 20514741 ~ 20514942 (+) True G376978
TU428495 lncRNA upstream 23007 20512803 ~ 20513129 (+) True G376976
TU428491 lncRNA upstream 31803 20504021 ~ 20504333 (+) True G376972
TU428457 lncRNA upstream 74796 20461004 ~ 20461340 (+) True G376938
TU428651 lncRNA downstream 491 20759746 ~ 20760016 (+) False G377125
TU428652 lncRNA downstream 491 20759746 ~ 20760485 (+) True G377125
TU428675 lncRNA downstream 40806 20800061 ~ 20846940 (+) False G377143
TU428677 lncRNA downstream 86047 20845302 ~ 20846940 (+) True G377143
TU428678 lncRNA downstream 90399 20849654 ~ 20851140 (+) True G377144
XM_021602055.2 mRNA upstream 121980 20390530 ~ 20414156 (+) True LOC110523393
XM_036977015.1 mRNA upstream 154517 20051393 ~ 20381619 (+) False LOC110523391
XM_036977023.1 mRNA downstream 71856 20831111 ~ 20842676 (+) False LOC110522817
XM_021601313.2 mRNA downstream 99087 20858342 ~ 20859762 (+) True pnx
XM_036977024.1 mRNA downstream 122683 20881938 ~ 20897867 (+) True LOC110522818
XM_021602058.2 mRNA downstream 138866 20898121 ~ 20910637 (+) True LOC110523395
XM_021602060.2 mRNA downstream 163759 20923014 ~ 20944043 (+) False ccar2
TU427802 other upstream 552288 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2452771 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2828379 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 3653951 16870434 ~ 16882185 (+) False G372618
TU428679 other downstream 72003 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 348914 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1413280 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 1413280 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1744497 22503752 ~ 22506270 (+) True G378832

Expression Profile