RNA id: XM_036977015.1


Basic Information

Item Value
RNA id XM_036977015.1
length 2357
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC110523391
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20051393 ~ 20381619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aattAGAAGGCAGCGACAGAGGCACAGCACCAGCCAGATGCGCGCGGAGGGCACAGCAGAACAGTCGAGCAGAACGAGAGCATGGTGGAACGCGCTTCGCGCACGGAGGGGAACGCGCTGATTGACAGCTTCGGAGGCACGGAGCGCCCCACGCCGCACACGAACCGAGCCCGCTAATCTGCCTGAACCGCTCTTGGCAAAAGCATCTGTGCGAAATAACCATCCTCATGCATATCAGCTACTAAATTGCCGCTGACCGGAGCCTTGCAGTCATCACTCAATTGTGGGAAGAAATCAACCCCACCACATAGCAATGTAGCAGGCGATAGGCTATTGCACTGTACCTTGGCTTAATCCTTTTCACTCAAAACGGGGCAGTCTGGAAGTAACTAACTATTTGTTTTTTTGCTTCTTCAATACTGAGGATAACACATTCTTGGCACTTGCTGAACGATTGGTGAGAGCAGTTCTGTAAGGAGAGCGCTATTGAGTTTTTTTTAGTAGACACATTTATTTGGAATATATTCCCGCTATCCAAGTGACCTTTTCATTGGATTCTCTGTTCATTTTCTTACTTTGACTTTCTTTGATCTCTGATTGTTATAGGTTGTTGCCTGTCGAAGGTAACGGCCAAAATTAACCGAATTTACAACCCAGAGAGGCAAAGAAGTTAAGTTCTGTGCGTTGGGTATGAGCTCACAATGTGTGTGGCTGTAGCTTCCCCATTACTCCTTCTAGAACCGTAGCCAGCCCGTGTGGTCGAGAAGTAGTttagcttctctctccctctgtacgTGAACACTTAGAGCTAACACCCCGTTCTATGGAGTAGATCGTCCGGAAAGAGACTAATAGAGCGTTCTCCTTTCCCCCCGCCTGGTACCAACAGGCGGCTTTGGTCTAAAGGTTCTCCGGAGAATGGTAAATGACCGACGGGGAATCATGAACAGCACTTCGGAACTCGAAGATGGACCACGGCATAAAAACCAGACGTTCTGTGAGTGTGTACCCAGCACCTCCCAGCTTAAACACCGCTGGTCAGACTCAGACACAGTCAGAGAGACCCCATCACCCACCAAGagGATGAGCTGCAGCTACCTCCTGTGCACCATCCTCCTCTTCGTCGCCGTCCTTCTGGCTGTCACGGCAACCGGCACCATCCTCTTCATGAACCACTACCAGGCCCCGCCCATGTCTGACGGCCCACCCCACATCTCAACCAATCCGGACGAGGCCAAcgccctggtaaccgtggagaggGGCGACGGCTCACGCATCAACATCTTCATCGACCCCAACTGTCCGGACTACAACGGGAACTTCCTACGCCTGGAAGGGGTGCAGACATCGCTGCTCCACTCGCTGACCGACCACGACACCGACCTGAAGTCCGTGAAAGGTCAAGACCGGGCGCTGCTGGTCAACCTAGCTGAGGAGGTGGCCAAACTGTCGGCCCACGCTGGTCAGCTGAAGATGGACTACGAGTCTCTGAGACGAGGTCAGGGGAGTCTGGGGCAGGATCTGAACACACTGCAGACAGAACAGGGACGCCTCATACAACTACTGTCTGAGAGCCAAATCAACATGGTGAAGGTGGTGAACACTGTGAGCGATGCTCTCAGCTCCATGCAGAAGGAGACAGGGGGACTGAAGGCTCGGGTCAAGGCTGACCTACAGAGAGCACCGGTCAGAGGGGCTCGTCTCAAAGGCTGTGCCAATGgcTCTCGTCCTCGTGACTGTGGTGATCTGTATGCTAATGGTCAGAGGGAGGATGGCATCTACTCTGTGTTTCCCACTCACTACCCCTACGGCTTCCAGGTCTACTGTGACATGACCACGGACGGAGGGGGCTGGACTGTGATCCAGCGCAGGGAAGATGGCTCGGTCAACTTCTTCAGAGGATGGGACTCCTACCGTGAGGGATTTGGCAAGATCACTGGAGAACACTGGctagggttgAAGCAGATTCATGCCTTGTCCATCCAGGGTAACTATGAATTGAGGATTGACCTGGAGGACTTTGACAACAGTACAGCCTACGCCCAGTACGAGACCTTTGGAGTGGGCCTGTTCTCTGTGGACCCGGATGATGATGGATACCCACTGACAGTTGGAGATTACTCCGGAAATGCAGtaacaACAAGCTCTGGCCACAAGATGAACCATCCCTGCCCCACTGTGACACGGATTGGTCTATTTAATCATCTCCAGACCCATGGCCAGCTATATCCACTACCCAGACCTGTGATACCTGGAGGGAAGTCATACTGGACAACAAGAGATCCCAAAGGAAAAAATGCTTGAcgaccgcagaccacgtgtaaccacaccaggccaggacctccacatcaggcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU427819 lncRNA upstream 52797 19998340 ~ 19998596 (+) True G376330
TU427815 lncRNA upstream 58284 19992677 ~ 19993109 (+) True G376326
TU427810 lncRNA upstream 60333 19990201 ~ 19991060 (+) True G376323
TU427806 lncRNA upstream 61634 19987512 ~ 19989759 (+) False G376323
TU427807 lncRNA upstream 61634 19987512 ~ 19989759 (+) False G376323
TU428370 lncRNA downstream 2407 20384026 ~ 20384324 (+) True G376857
TU428374 lncRNA downstream 5661 20387280 ~ 20387705 (+) True G376859
TU428380 lncRNA downstream 6646 20388265 ~ 20388600 (+) True G376862
TU428382 lncRNA downstream 7886 20389505 ~ 20389755 (+) True G376864
TU428385 lncRNA downstream 39311 20420930 ~ 20421730 (+) True G376867
XM_021602045.2 mRNA upstream 542328 19499604 ~ 19509065 (+) False LOC110523383
XM_021602038.2 mRNA upstream 687304 19358271 ~ 19364089 (+) True LOC110523377
XM_036976994.1 mRNA upstream 1473165 18558152 ~ 18578228 (+) False LOC110523370
XM_036976993.1 mRNA upstream 1473165 18558181 ~ 18578228 (+) False LOC110523370
XM_021602005.2 mRNA upstream 1473165 18558182 ~ 18578228 (+) False LOC110523370
XM_021602055.2 mRNA downstream 8911 20390530 ~ 20414156 (+) True LOC110523393
XM_036977016.1 mRNA downstream 126455 20508074 ~ 20759255 (+) False LOC110522816
XM_036977017.1 mRNA downstream 126455 20508074 ~ 20759255 (+) False LOC110522816
XM_036977020.1 mRNA downstream 126455 20508074 ~ 20759255 (+) False LOC110522816
XM_036977018.1 mRNA downstream 154517 20536136 ~ 20759255 (+) False LOC110522816
TU427802 other upstream 67545 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 1968028 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2343636 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 3169208 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 3169208 16870434 ~ 16882185 (+) True G372618
TU428545 other downstream 209861 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 361965 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 449639 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 726550 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1790916 22172535 ~ 22231920 (+) False G378660

Expression Profile