RNA id: XM_021602038.2


Basic Information

Item Value
RNA id XM_021602038.2
length 2464
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110523377
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19358271 ~ 19364089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTTTGTGTGCTTGTCACCTTACTGGATATTATGTATAGATTTTTAGCCAACATCCTTGATTACAGTTTTTATTGGTAGAGTAGTTTATATTAAGCAACATAATTCAGGATGAACGGAATGAACTCCTTTATCTAGGAACCAAGTACAACCGTGGACGTGTTTACTTTCGGACATTCACACTTGTGACAAATTTCCGAAGTACACATTTCAGCATGGCGTTTAGAAAAATGTGTAACGTTGGATCTCTAATTGTGTACAGCATAACGATTGTTGCGGCGTTGTAATTATTCATTTAGCTCTTTATAGAGGTGAAATATTCCTGTTTAAACCACGAGTACCGATTAGTTATGTTATTGTTACTTAGCAAATGTAGCGAATTCGTTCATGTTTGAGCTTCTGATCACATGTTAGCAGAGCTAGCGAACTTATAGCAAGTAGCTAACTTACTGAGCTACAGAACGTTTGAAGTATATTGGGCTGTCAAAAGCTAGTCATTTAGCAAGGTTAACTTTTTTTAATGAGATATTAAGAGTATAAAGTGGAAGTCCTGGCTGTCATTACTCTCACACTGCTTCCCACCAAGAAATCAACCGAGTTGACAGCAAGATTTTCAAAAGCTAAGCTCACAGCCATCGAGACATGATGTGTAAAGTCAAACCAGAGAAAACGGACTCTGCTGCTTCTAAAGTGCCAAAATCCAGTCAGAGCCAAACGAAAAAGAAACCTCGAAAGAAAACGTTTTATCAACACACCAAGAAAAAAGAGCCCATTTCAAAAGATCAAGGTAAAACCAAGGCGTTGCTTCCCCCGAAAGATGCCCAACAGTTTTCAACCAACTGGAAAACGTTACTAGAGGTGTTCAAATCCAACCCCCCTCCTGTGAAAAGGCAACTGTTTCAGCAAAACTCAAAGAAGGAAGTCCCTAAGAAACCCACTAAAGACATTTCAAAGGACGAGACTCATAAGAAACCAACTAAAGACGTTTCGAAGGAGGTGGCTGTGGTGCATAAGAAGCCTGCTAAGAACGTATCAAAGACAGTGACTGATGCCAAGGCAACTAAGCCCAAGCAGGTGAACAGTGGGAAAGCATGGAAGGACAGTTCTGTTCCTAGTAAAACTCAGGTGAATGGGATAGATCCAGGACAATCGGGGACAGAACAGCCCAAAGCCAAGAAGAGGAAACAGAGCAGTGTCCAGATAGACAGCAATGCACAGTTGAAGAAGAAGAAAGTAGAAGTGGAGGAAAAGAAACCCACTGAATTGGACATGTGGTTTGATGATGTGGACCCTGACGACATTGAGGCCACAGTGGGAACAGAGGCAGCCGATATCATGAGGAAGATCCAAGGCACTCAGAAGACAGACGCCCAGACCACAGAGAGCGCGCTGGTCAAGGACAGGGCATTTGAGGGCCTGACCAAGGCGGTGGCTATGGACTGTGAGATGGTGGGTGTGGGGCCAGATGGAGAGGACAGCATCGTAGCCCGGGTCTCCCTTGTCAACCATTTTGGAAAGTGCATCTATGACAAATTCGTCAAACCCACAGAGAAGGTGACGGACTACAGGACAGCTGTCAGTGGCATCCGACCAGATGACATCAAAAACGGTGAGAATGTGAAGACCGTACAGAAAGAGGTGGCTGAGATCCTCCAGGGGAGAACGCTTGTGGGACACGCCATTCACAATGACCTCAAGATTTTGTTCTTGGATCACCCAAAAAAGAGAATCAGAGACACCCAGAAGTATAAATCTTTCAAGAAAATTGTGAAGagTGGTCGGCCCTCTCTGAAACTCCTGTGTAGAGAAATACTCGGTGTCAAAGTACAACAGGGAGAACATTCATCCGTCCAAGACGCCCAGGCGACCATGAGGTTGTACACGATGGTGAAGAAACATTGGGAGGCAGAGATCAAGGCTAGTCATAACAACCCGGAGTTAACCAAGAAGACCAAGGAACCAAGGAAGCCCAAATCACCCAAACACAAATGAACCTGACTGACTGAACTGCATCAGTCTGTAATGGGACTGAGGACTCGCCCTTGACTAGATGGCACAGGACAGGAGGCTTGATTGAATTAACAATTGTTTCTTTTGGAAGTGAACTTGCACTTTGAGGTCTTAGTGAATTGAGGAATCTCTTGGTGACCCATAAGGATTACACAAAGCGGTTTGATCAAATTAATATGGACTTTATTCAAATCCCACTCAACCCTAATCATTCAGAAAGTTGGTCATCAGAAACAGCCTAGTGCCGCTTTAACTATGCATGGATCTTTCACTCATTGTCTGCTATATCAGTTTTCTGGTTCGAATGTTTTAAAATGTGGTATTTTTCTGATCTAACATCCATGTCTTGATGTTGAATATCTGCAGTTTAAATTCCAAGTGTTTGGATTATGTGTTGCCTTTGTATTTGAGAGTTTTTCATGAATTAAAGGTAAGATATTTAAATCACAAGTAA

Function

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0004527 exonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18327 REXO4, REX4; RNA exonuclease 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU426889 lncRNA upstream 2153 19355874 ~ 19356118 (+) True G375481
TU426885 lncRNA upstream 4683 19353291 ~ 19353588 (+) True G375477
TU426852 lncRNA upstream 47978 19309904 ~ 19310293 (+) True G375445
TU426851 lncRNA upstream 48963 19308826 ~ 19309308 (+) True G375444
TU426808 lncRNA upstream 105027 19252927 ~ 19253244 (+) True G375421
TU426893 lncRNA downstream 12200 19376289 ~ 19376554 (+) True G375485
TU426894 lncRNA downstream 13357 19377446 ~ 19377709 (+) True G375486
TU426896 lncRNA downstream 15060 19379149 ~ 19379375 (+) True G375488
TU426899 lncRNA downstream 19520 19383609 ~ 19383849 (+) True G375491
TU426902 lncRNA downstream 24274 19388363 ~ 19388589 (+) True G375494
XM_036976994.1 mRNA upstream 780043 18558152 ~ 18578228 (+) False LOC110523370
XM_036976993.1 mRNA upstream 780043 18558181 ~ 18578228 (+) False LOC110523370
XM_021602005.2 mRNA upstream 780043 18558182 ~ 18578228 (+) False LOC110523370
XM_021602001.2 mRNA upstream 852129 18487620 ~ 18506142 (+) False egfl7
XM_021602045.2 mRNA downstream 135515 19499604 ~ 19509065 (+) False LOC110523383
XM_036977015.1 mRNA downstream 687304 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA downstream 687309 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA downstream 687309 20051398 ~ 20264903 (+) False LOC110523391
XM_036977014.1 mRNA downstream 687310 20051399 ~ 20264903 (+) True LOC110523391
TU425343 other upstream 1274906 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 1650514 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 2476086 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 2476086 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 2619771 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 619172 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 1227391 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 1379495 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 1467169 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 1744080 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile