RNA id: TU427810


Basic Information

Item Value
RNA id TU427810
length 252
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G376323
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19987512 ~ 19991060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTAacactggaacattgcctttataTTTCAATCCCCCTGTAacactggaacattgcctttacatttcaatccccctgtaacactggaacattgcctttaaatttcaatccccctgtaacactggaacattgcctttaaatttcaatctcactgtaacactggaacattgcctttacatttcaatccccctgtaacactggaacattgcctttaaatttcaatccccctgtaacactggaacattgccttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU427806 lncRNA upstream 442 19987512 ~ 19989759 (+) False G376323
TU427807 lncRNA upstream 442 19987512 ~ 19989759 (+) False G376323
TU427804 lncRNA upstream 3174 19986794 ~ 19987027 (+) True G376322
TU427803 lncRNA upstream 5214 19984651 ~ 19984987 (+) True G376321
TU427801 lncRNA upstream 7163 19982793 ~ 19983038 (+) True G376319
TU427815 lncRNA downstream 1617 19992677 ~ 19993109 (+) True G376326
TU427819 lncRNA downstream 7280 19998340 ~ 19998596 (+) True G376330
TU427953 lncRNA downstream 197716 20188776 ~ 20189381 (+) True G376454
TU427970 lncRNA downstream 230876 20221936 ~ 20226766 (+) True G376471
TU427999 lncRNA downstream 275826 20266886 ~ 20267159 (+) True G376499
XM_021602045.2 mRNA upstream 481136 19499604 ~ 19509065 (+) False LOC110523383
XM_021602038.2 mRNA upstream 626112 19358271 ~ 19364089 (+) True LOC110523377
XM_036976994.1 mRNA upstream 1411973 18558152 ~ 18578228 (+) False LOC110523370
XM_036977015.1 mRNA downstream 60333 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA downstream 60338 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA downstream 60338 20051398 ~ 20264903 (+) False LOC110523391
XM_036977014.1 mRNA downstream 60339 20051399 ~ 20264903 (+) True LOC110523391
XM_021602055.2 mRNA downstream 399470 20390530 ~ 20414156 (+) True LOC110523393
TU427802 other upstream 6353 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 1906836 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2282444 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 3108016 16870434 ~ 16882185 (+) False G372618
TU428545 other downstream 600420 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 752524 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 840198 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 1117109 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 2181475 22172535 ~ 22231920 (+) False G378660

Expression Profile