RNA id: TU427815


Basic Information

Item Value
RNA id TU427815
length 433
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G376326
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19992677 ~ 19993109 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttccggattgactgaccttcatgtcttacagtaatgatggactgtcgtttatctttgcttatttgagctgttcttgcatgATATGgacatggtattttaccaaatcaaatcaaatcaaatcaaatcaaatagggctatcttctgtataccacctctaccttgtcacaacacaactgataggctcaaactcattaagaagggaagaaattacacaaataaaacatgttcactgaaatgcattccaggtgactacctcatgaagctggttgggagaatgccaagagtgtgcaaagctgtcatcaaggcaaagggtggctactttgaagcatctaaatgataaaatatacgtATTTAGGTTTGTTTAAAACttgttttgtttactacatgattccatgtgtgttattttatagttgtgatgtcttcactattattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU427810 lncRNA upstream 1617 19990201 ~ 19991060 (+) True G376323
TU427806 lncRNA upstream 2918 19987512 ~ 19989759 (+) False G376323
TU427807 lncRNA upstream 2918 19987512 ~ 19989759 (+) False G376323
TU427804 lncRNA upstream 5650 19986794 ~ 19987027 (+) True G376322
TU427803 lncRNA upstream 7690 19984651 ~ 19984987 (+) True G376321
TU427819 lncRNA downstream 5231 19998340 ~ 19998596 (+) True G376330
TU427953 lncRNA downstream 195667 20188776 ~ 20189381 (+) True G376454
TU427970 lncRNA downstream 228827 20221936 ~ 20226766 (+) True G376471
TU427999 lncRNA downstream 273777 20266886 ~ 20267159 (+) True G376499
TU428004 lncRNA downstream 279549 20272658 ~ 20297610 (+) True G376503
XM_021602045.2 mRNA upstream 483612 19499604 ~ 19509065 (+) False LOC110523383
XM_021602038.2 mRNA upstream 628588 19358271 ~ 19364089 (+) True LOC110523377
XM_036976994.1 mRNA upstream 1414449 18558152 ~ 18578228 (+) False LOC110523370
XM_036977015.1 mRNA downstream 58284 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA downstream 58289 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA downstream 58289 20051398 ~ 20264903 (+) False LOC110523391
XM_036977014.1 mRNA downstream 58290 20051399 ~ 20264903 (+) True LOC110523391
XM_021602055.2 mRNA downstream 397421 20390530 ~ 20414156 (+) True LOC110523393
TU427802 other upstream 8829 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 1909312 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2284920 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 3110492 16870434 ~ 16882185 (+) False G372618
TU428545 other downstream 598371 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 750475 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 838149 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 1115060 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 2179426 22172535 ~ 22231920 (+) False G378660

Expression Profile