RNA id: TU443242


Basic Information

Item Value
RNA id TU443242
length 226
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G390450
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 32313137 ~ 32313362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTAGTGCTGTCAGTATCATTATAGGTTCgggggtgtgtcagaaatatgtttgctattcaaatcaaataaaatgttatttgtctcatgcttcgtaaacaacaggtgtagactaacagtgaagtgCTCCCGTCCCAACAATGCagggagaaagaaaatagagaaataatagaaaagtaaaacacgtaataataaaagtagtaatgagtaatgataactcatatatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443238 lncRNA upstream 8308 32304606 ~ 32304829 (+) True G390446
TU443186 lncRNA upstream 89040 32223748 ~ 32224097 (+) True G390396
TU443184 lncRNA upstream 90702 32222227 ~ 32222435 (+) True G390394
TU443179 lncRNA upstream 97778 32214442 ~ 32215359 (+) True G390389
TU443177 lncRNA upstream 100319 32212619 ~ 32212818 (+) True G390387
TU443407 lncRNA downstream 4793 32318155 ~ 32318369 (+) True G390610
TU443434 lncRNA downstream 20173 32333535 ~ 32334298 (+) False LOC110523612
TU443435 lncRNA downstream 21246 32334608 ~ 32336514 (+) True LOC110523612
TU443466 lncRNA downstream 89464 32402826 ~ 32403113 (+) True G390649
TU443520 lncRNA downstream 223051 32536413 ~ 32536927 (+) True G390700
XM_021602468.2 mRNA upstream 42355 32257928 ~ 32270782 (+) False lhx3
XM_021602467.2 mRNA upstream 42355 32260648 ~ 32270782 (+) False lhx3
XM_021602466.2 mRNA upstream 42355 32260650 ~ 32270782 (+) True lhx3
XR_002473470.2 mRNA upstream 152720 32152908 ~ 32160417 (+) False LOC110523608
XM_036977274.1 mRNA upstream 1340794 30966139 ~ 30972343 (+) False LOC110522913
XM_036977283.1 mRNA downstream 20140 32333502 ~ 32336445 (+) False LOC110523612
XM_036977284.1 mRNA downstream 27514 32340876 ~ 32390222 (+) False LOC110523614
XM_036977285.1 mRNA downstream 27514 32340876 ~ 32390222 (+) False LOC110523614
XM_036977287.1 mRNA downstream 27514 32340876 ~ 32390222 (+) False LOC110523614
XM_036977286.1 mRNA downstream 54276 32367638 ~ 32390222 (+) True LOC110523614
TU443183 other upstream 92604 32220181 ~ 32220533 (+) True G390393
TU442960 other upstream 352392 31960355 ~ 31960745 (+) True G390184
TU440680 other upstream 2025313 30286951 ~ 30287824 (+) True G388019
TU440079 other upstream 2415003 29896986 ~ 29898134 (+) True G387516
TU439971 other upstream 2566943 29741800 ~ 29746194 (+) True tbx5a
TU444420 other downstream 845464 33158826 ~ 33162980 (+) True G391513
TU444741 other downstream 1047595 33360957 ~ 33361341 (+) True G391805
TU445804 other downstream 1834112 34147474 ~ 34148701 (+) False G392776
TU448046 other downstream 3591750 35905112 ~ 35905781 (+) True G394882
TU448080 other downstream 3653575 35966937 ~ 36004829 (+) True G394910

Expression Profile