RNA id: TU479359


Basic Information

Item Value
RNA id TU479359
length 2679
lncRNA type antisense_over
GC content 0.48
exon number 4
gene id G423057
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60368429 ~ 60393194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTTTAGACGTAGGAAAGATTAGGCTTTTAATGAGTTTCATTTGCACAGTGAGATGGACAGAAGGCACAGAGAACGGCCTGTGTTTCTGGAAGCGAACCCTGGGacacagtaggcctacagtgggAAAGGGTGAGAGGACAGACACCCTAGAGGCAGcatgagacagacaggaagagacatcTACAAGGAGGTCATGTCATTGAGGGCATGGTCCAGCTCCTCGCTGATTGCCTTGTACTTCAGCTTCTGAGCGTACAGTTCTTCCAGGTCGTCGATGGACTTTTCGAGTTTGGCCACAGTCCTCTCTGCAAACTCTGCACGAGTCTCAGCCTGGGGGACACAGAGGGAGTGGGAGGGCGTCAGAACAAGACGCCATCTTTGACATGGAGCAAATTGGTTTACTACTGTATGAATTAAGAATCAGATGCCAGCAGTTCCTTACCTCCTTCAGCTTGTCACTAAGAACCTTGATCTCCTCCTCATACTTGTCCTCTTTTTCTGAGTACTGTCAAAATACAAGTCTGTTACAGGCAAGCTCTGAACTCTTGAACATGCCTGAACTCCCAAGACAGATTCAGACATATTAGCATGAAAGTGCACAGAGAATGATGGTCTTGCAGGACTGTGTGTCAACCATGCTTAGTTGTAACACAACTCTTCAGGTGTGATCAAACTGGCCATGTGTTGGTATAAGGAACACATTGTGCTGCGATGCCAAAGAGAAGGACATTGATTTAATCAGCACAGAGCAACTGCTTAAGTGGCTAAGGTGGAATCATGCGGCGTGACTGGCACTAGAGCGGCTGGGTCGGAACGCAGAGACATATCTGTGCTGTTTTAGGACTATTTCGCCGTCATGCGTCATCAACATTATCATAAAGAAATCAACGTCCAGTTTGTCCGGTTGATAACAGGGTCTTTGCTCTGACGTCTGTGAAGGTGAAAGTGCGGCAGGCAGTGATTATACTCTAAACTACTCTGCTTTCACATCAGCCTTGTCGAGTCAACTCCTGATAGATACAAAGGCTCGGGACAGCCCTTAAGTGGGTGAACTAACCCTGAACATGCAGATATCCAGGATAAGTTCAAATCATGTACTTTGAATTGTGAATGGTGAGCTACACCGCACTTCGCACTTATCCAACGTTCACTTATCAGCAGTTGACTGCATTTACTTGTATGATGTAATAGTGTGCACACTGACCTTCTCAGACGAGGCTTCTAGGGACTTGAGGTTGTTGGTCACATTTTTCAACTCCTCCTCCAGGTCACTGCATTTACTACAGGTGGAGAAAGGAAGAAAAGTACTTTGCTTTGACATCGTAATAGCTACACAAGCCTGGAAAAACCTTCAAGTTACTGATGTCCATTTTAGCTTATGGCAGAAAATCCCCATTTTTAACTAGACactgttttttaaatgttaattaaaaaaaagtgttatgaaaCTCCTTACAAACCTTAGTCTTTGACTCATCTATTTCtaaataggaggagaagagacccCATCACAGAGGTCCTAACCCCCAATTCCCCTTTGTCATTCCAGCGTAATAGGCGGACTGTGCTGCACTTACAGTTCTGAGACCTCTGccctctcctcagctctctccagctctccctccAAGATCACCAGCTTACGGGCACCTCCTCGTATTTGCGGTCGGCCTCCTCAGCGATGTGCTTGGCCTCCTTCAGCTGCATCTCCTggatctccatcttctcctcGTCCTTAGAGGCTCTGTTCTCTATCACCTTCATTCCTCTGATTGGACAGGACACACTCTCGCTCTCATCTGCGGCCTTCTCTGCCTCCTCCAGTTTCTGCAGCGCggtagacagcctctcctgggccCGGTCCAACTCCTCCTCCACTAGCTGGATCCTGCGGTTCAGACCCGCCACATCACCCTCCGcctgggagaagagagggggaagaggggtcAAAGGTTAGACAGATATCAGGGTCACACTCACATCGTAACGCTGGTTGTACTAAATTGGATGCTCTTCACTCGATAAACAATCCACGTTGTAGAAAGCAAACAGAAAAGCAAACATTTATTTAGTCCATAAGCATATCCACCTCCCAGCGAACTGACTCCAGACCAGTGCAATGGAAGTTCTCCAGCAAACTCAGACTCACTCAGGCCCTACTACTACTTATCCCACAGTTCAGTACAGCACCCGCAGGCCTGCCTCTGGCTGACCATGACCAGACCCATTTTTACATAACCTGCAGTTACTCTCCTCCTAATTACAAGGCGTGTTGACAAAGGGAGCTGCCCTCCACTGCCCTCTATCACTTGGTCCTATCTCCAGCCAGTCAGTCTTTCAGTCAGATAGTTACCATGGGTGTGAGGACTGAACATGAGGCCTGCTTGCTAGAGATGCTGTCTCAGAGGCCAGTAAAACACACGTTAGGGCTAGGGCCTGGAATAAAAGGGCCACAGAGAGGGAGGTTTCCAGTTGGAGAGGGAGCTAACAGAGCACAGAGGAAAAGGGTAATTAGGAGCTATTTGTGCAGAGTGAGTGCCATTCCATTTTCTCATGGGCTGGATATTCCAACTTTACTCTGGGCTGACTGTGGGAGAGAGACATGGCTTCCTACTCTGCTCTGGGCTGACTGTGGGAGAGAGACGTGGcttcctgctctgctctgggctGACTGTGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479380 lncRNA downstream 24190 60360590 ~ 60362946 (-) True G423073
TU478728 lncRNA downstream 77065 60308829 ~ 60310071 (-) True G422481
TU478721 lncRNA downstream 90649 60296174 ~ 60296487 (-) True G422474
TU478718 lncRNA downstream 93428 60293502 ~ 60293708 (-) True G422471
TU478715 lncRNA downstream 106690 60280128 ~ 60280446 (-) True G422468
TU479358 lncRNA upstream 2075 60395269 ~ 60398805 (-) True LOC110524214
TU479402 lncRNA upstream 28690 60421884 ~ 60422186 (-) True G423095
TU479405 lncRNA upstream 31681 60424875 ~ 60425198 (-) True G423098
TU479406 lncRNA upstream 32382 60425576 ~ 60425946 (-) True G423099
TU479407 lncRNA upstream 32827 60426021 ~ 60426387 (-) True G423100
NM_001124604.1 mRNA downstream 80496 60298204 ~ 60306640 (-) True lpl
XM_021603652.2 mRNA downstream 97705 60282374 ~ 60289431 (-) True LOC110524209
XM_021603647.2 mRNA downstream 252864 60116530 ~ 60134272 (-) True LOC110524206
XM_021603643.2 mRNA downstream 405517 59979007 ~ 59981619 (-) True klf2a
XR_005051823.1 mRNA downstream 472860 59904845 ~ 59914276 (-) False LOC118964630
XM_021603661.2 mRNA upstream 1830 60395024 ~ 60398861 (-) False LOC110524214
XM_021603660.2 mRNA upstream 2400 60395594 ~ 60398862 (-) False LOC110524214
XR_005051825.1 mRNA upstream 20969 60414163 ~ 60426534 (-) True LOC118964632
XM_021603665.2 mRNA upstream 66653 60459847 ~ 60462191 (-) False ccl44
XM_021603666.2 mRNA upstream 66653 60459847 ~ 60462193 (-) False ccl44
TU478587 other downstream 286080 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1248879 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1350837 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 1972993 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2273076 58112387 ~ 58114060 (-) True G420193
TU479791 other upstream 665800 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 1223676 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 1256773 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 1265839 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 1495004 61888198 ~ 61927422 (-) False G424649

Expression Profile