RNA id: TU496670


Basic Information

Item Value
RNA id TU496670
length 3231
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G438657
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74665247 ~ 74668503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGACTGTACATAATGCATATTGAAACATGAGGATAACTTCTGAGTATTAGGGCTAACTAACTATATTTACTGTACCATGGATTATACTTCAAGAGCCAAAACAAGCCCTTCCTCTCACATCAAATACAAGGACAATAGAAAAAAGTGCAACAGTTTTAAGGTGATGGCAGAGAAAGTCTAagtccagcctggtctcatagaataGACGTAACATAGTAGATGTAAATTCGGGATAcccaaattagtatgatatgttaagtttggtatggttacatatgACAGAAGGTTACGTATGAAAGTAGGgcggttggtcggggtggatggtCGGGCGTTGCAAATaagtagcatgttagctaaccttaaccctttaacatTCCTAACCCCttgcctagctaatgttagccacctagttaatgttagccacctagttaacattagccacaacaatTGGCATTCGCAATACGTACAAACTGCATATTCGTAACATATCGTAcgaatacgaattgtaattcttAACATGTCATATGGATTGGataatggacatccacaaattaccACATACCGTACGAAACGTAACTTATCACACTAATCAAGTGTTTTGTAATagcatttactatgttacgtctacccatGAGTCCAGGTTGCACAGTCAAccataaagacagacagagaggcagtgaGGACCGCTAGTAGAAGATACTGCAAGATTAAACATTAAACATACACATAATGATGTATGACATCACGTTATATATCTCAACTAGTGTATTTCACATGGATAGAACACCCTACTGTTGTCTCTTTACAGGACGGCAACATGGCTGTAGATATAACATTAGCTAAATCACAATAAAACACATACATAATGTCCTCTCTGATTTGGAAGATGATGTACTTCTTCCAGCTTCTTGGCTTTGAGAAGCACAGGAGCTGTCAAACAACCAAATCAGATGACTATGTGGTTTTTCTCTCTGGTTCTCTTCCATTATCTGCAGCGAATATTGCTCTGTGTTTATTATTAACAtaaatgcattattattattacaatggCATAATCTCAAACCTTGAAAAAAAATGTTCTTGCATGCTGTACTAATACACATACATGTATTTTCATTTCGCCCAGGTTCAATGTCACTCATACTTAGCTTGAGTTCATTTTACAATTTGAATAAAACATATTCCCATTTCAAAAAGTACATAAATGACAGATTCCAAGATGTAAcagatattattatttttgtaataTCCTAATGGTTACAGAAAAGAGTTGAGAGTGTTGAAAGATGGGTTTCACATGTTCAAATGGAGCTGCACATAAGTTGCATATAATACTGGCATGTTACCACCAGTTCTTCTCTCAAATATAAAAACACTCTACCACTATTTACATTACAATCCAACTGGGGCCTTTCCTAAGCATACCTCTGCATGTGAAAGAGAGACAATGGTTTACATGTTGGTGTACAAATGTTGTCTTTTGGAGAGTGGTAAAGTTACAAGCCAGGTGAAGATAGATGTATTCTTCAATTAAAACCTATATCATCACCTTCCTCAACCCATTATTCACAAATACATGCGTgcgcatgcgcgcgcacacacacacacacacacacacacacacacacacacacacacgacacgaCTTCAACACTATCaataagtttgccgatgacacaacagtggtaggcctgatcaccaatatTAATGAGAGCCTATAgcgaggaggtcaaagacctggcagtggtgccaggacaacaacctcttcaatgtgagcaagacaaaggagatgattgtggactaaaggaaaacgaggaccgagcactcccccattctaatcgtcggggctgtagtggagcaggttgagagctagtgtgtacggcccagtacatcactgggaccaagtttcctgtcatccaggacctctataccaggtgtcagaggaaggccctaaaaattgtcaaagacttcctcgctcccaagtcatagactgtcctctgctactgcacggcaagaggtaccggagcgccaagtctaggtccaagacgcttctaaacagcttctaccccgaagccataagactcctgaacatctactcaaatggctacccagactatttggattgccacccctcttttacgctgctgctactctgttactatctatgcatagtcactttaataattctacctacatgtaaactcagcaaaaaaagaaacatccctttttcaggaccctgtctttcaaagataatttgtaaaatccAATGTAAacagtttaaacactgtttcccatgcttgttcaatgaaccataaacaattaatgaacatgcacctgtggaacggtcgttaagacactaacagcttacagacggtaggcaattaaggtcacagttatgaaaacttaggacactaaagaggcctttctactgactctgaaaaacacaaaaacaagatgcccagggtcccttctcatctgcgtgaacgtgccttaggcatgctgcaaggaggcatgaggactgcagatgtggccagtgcaataaattgcaatgtccgtactgtgagtcGCCTAAGACAGagttacagggagacaggatagaccgctgatcatcctcgcagttgtagaccacgtgtaacaacacctgcacaggatcggtacatctgaacatcacacctgcgggacaggtacatgatggcaacaacaactgcctgagttacaccaggaacgcacaatccctccatcagtgctcagtctgtccgcaataggctgataGAGGCTGGACTGATAGAggtaggcaggtcctcaccagacattactggcaacaacgttgcctatgggcacaaacccaccatcgctggaccagacaggactggcaaaaagtgctcttcactgacgagtctcggttttgtctcaccaggggtgatggtcggattcgcatttattgtcaaaggaatgatcgttacaccaaggcctgtactatggagtgggatcgatttggaggtggagggtctgtcatggtctggggcggtgtgtcacagcatcatcggactgagcttgttgtcattgcaggcaatctcaacgctgtgagttacagggaagaaatcttcctccctcatgtggtacccttcctgcaggctcattctgaCATGTCCCTccggcatgacaatgccaccagccatactgctcgttctgagcataatttcctgcaagacaggaatgtcggtgttctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU496650 lncRNA downstream 28438 74636593 ~ 74636809 (-) True G438637
TU496648 lncRNA downstream 29825 74635081 ~ 74635422 (-) True G438635
TU496571 lncRNA downstream 53596 74611395 ~ 74611651 (-) True G438570
TU496569 lncRNA downstream 54386 74610250 ~ 74610861 (-) True G438568
TU496555 lncRNA downstream 67033 74597982 ~ 74598214 (-) True G438554
TU496684 lncRNA upstream 15333 74683836 ~ 74684046 (-) True G438669
TU496704 lncRNA upstream 34601 74703104 ~ 74703408 (-) True G438689
TU496707 lncRNA upstream 36042 74704545 ~ 74704798 (-) True G438692
TU496710 lncRNA upstream 37204 74705707 ~ 74705930 (-) True G438695
TU496711 lncRNA upstream 40157 74708660 ~ 74708942 (-) True G438696
XM_021604330.2 mRNA downstream 164142 74405846 ~ 74501105 (-) True LOC110524556
XM_021604332.2 mRNA downstream 164397 74405846 ~ 74500850 (-) False LOC110524556
XM_036978391.1 mRNA downstream 164398 74405846 ~ 74500849 (-) False LOC110524556
XM_021604329.2 mRNA downstream 164399 74405846 ~ 74500848 (-) False LOC110524556
XM_021604331.2 mRNA downstream 164400 74405846 ~ 74500847 (-) False LOC110524556
XR_005051858.1 mRNA upstream 138703 74807206 ~ 74820307 (-) False LOC118964644
XR_005051859.1 mRNA upstream 138703 74807206 ~ 74820307 (-) True LOC118964644
XM_021604345.2 mRNA upstream 180327 74848830 ~ 74857210 (-) False LOC100135915
XM_021604339.2 mRNA upstream 180327 74848830 ~ 74891311 (-) False LOC100135915
XM_021604340.2 mRNA upstream 180327 74848830 ~ 74891311 (-) False LOC100135915
TU495056 other downstream 1254908 73370608 ~ 73410339 (-) True LOC110524526
TU494857 other downstream 1518119 73146358 ~ 73147128 (-) False G437079
TU494858 other downstream 1518119 73146358 ~ 73147128 (-) False G437079
TU494859 other downstream 1518119 73146358 ~ 73147128 (-) True G437079
TU494844 other downstream 1540209 73122112 ~ 73125038 (-) True G437074
TU497050 other upstream 196756 74865259 ~ 74927797 (-) True G439002
TU497119 other upstream 294957 74963460 ~ 74963696 (-) True LOC110523004
TU497719 other upstream 594970 75263473 ~ 75265403 (-) True G439594
TU497923 other upstream 902746 75571249 ~ 75575569 (-) True G439788
TU499371 other upstream 1917955 76586458 ~ 76590370 (-) True G441168

Expression Profile