RNA id: TU496710


Basic Information

Item Value
RNA id TU496710
length 224
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G438695
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74705707 ~ 74705930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atccaagtctgtacccaaacaattcgagcttctacttctaaaaattaacctttccagaaacaagtctctcactggtgccgcttgctatagacctacctctgcccccagctgtgccctcgataccatatgtgaattgatttcccccatctatcttctgagctcgtgctactaggtgacctaaactgggacatgcttaacaccccggccatcctacaatcttaact

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU496707 lncRNA downstream 909 74704545 ~ 74704798 (-) True G438692
TU496704 lncRNA downstream 2299 74703104 ~ 74703408 (-) True G438689
TU496684 lncRNA downstream 21661 74683836 ~ 74684046 (-) True G438669
TU496670 lncRNA downstream 37204 74665247 ~ 74668503 (-) False G438657
TU496671 lncRNA downstream 37204 74665247 ~ 74668503 (-) True G438657
TU496711 lncRNA upstream 2730 74708660 ~ 74708942 (-) True G438696
TU496996 lncRNA upstream 64537 74770467 ~ 74771392 (-) True G438952
TU497001 lncRNA upstream 69269 74775199 ~ 74776202 (-) True G438957
TU497004 lncRNA upstream 129564 74835494 ~ 74836105 (-) True G438959
TU496994 lncRNA upstream 138106 74844036 ~ 74846616 (-) True G438951
XM_021604330.2 mRNA downstream 204602 74405846 ~ 74501105 (-) True LOC110524556
XM_021604332.2 mRNA downstream 204857 74405846 ~ 74500850 (-) False LOC110524556
XM_036978391.1 mRNA downstream 204858 74405846 ~ 74500849 (-) False LOC110524556
XM_021604329.2 mRNA downstream 204859 74405846 ~ 74500848 (-) False LOC110524556
XM_021604331.2 mRNA downstream 204860 74405846 ~ 74500847 (-) False LOC110524556
XR_005051858.1 mRNA upstream 101276 74807206 ~ 74820307 (-) False LOC118964644
XR_005051859.1 mRNA upstream 101276 74807206 ~ 74820307 (-) True LOC118964644
XM_021604345.2 mRNA upstream 142900 74848830 ~ 74857210 (-) False LOC100135915
XM_021604339.2 mRNA upstream 142900 74848830 ~ 74891311 (-) False LOC100135915
XM_021604340.2 mRNA upstream 142900 74848830 ~ 74891311 (-) False LOC100135915
TU495056 other downstream 1295368 73370608 ~ 73410339 (-) True LOC110524526
TU494857 other downstream 1558579 73146358 ~ 73147128 (-) False G437079
TU494858 other downstream 1558579 73146358 ~ 73147128 (-) False G437079
TU494859 other downstream 1558579 73146358 ~ 73147128 (-) True G437079
TU494844 other downstream 1580669 73122112 ~ 73125038 (-) True G437074
TU497050 other upstream 159329 74865259 ~ 74927797 (-) True G439002
TU497119 other upstream 257530 74963460 ~ 74963696 (-) True LOC110523004
TU497719 other upstream 557543 75263473 ~ 75265403 (-) True G439594
TU497923 other upstream 865319 75571249 ~ 75575569 (-) True G439788
TU499371 other upstream 1880528 76586458 ~ 76590370 (-) True G441168

Expression Profile