RNA id: TU501489


Basic Information

Item Value
RNA id TU501489
length 3935
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G443066
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 78233349 ~ 78237283 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actaAATTACTAATATGTAAATGTTTGTGGCGTTGCTGGTGTGCCATCTTCCTTCGGATTAGTCTTCATAGACATGGTGTTGAACTTTGAACTGACCATGAGGGGTCAGCAGTGTTTCACAGCTGAGTCTTTTTTGTGACAATATTCCACAATCTACAGTAAATCCTTCGGTCTTTAGGATGCAagttcatggtccaaacatacacTGTTATATTTTAGAGATTTTTTGCCTTTTCTCTGACAATTATCATGATACTTACATATGTTACATGATAATTACACATTTCTTCTCCCTGAGATTTTTGGATGAATACTTAACGTGACAGCTTCCTCCATATCCATGATCCTCTCTGAAAATCCCATATTCCCCCTGAAAACACCTCTGTAGATACATTCATAAAAATGGCCTTTGTATGTAGCTAGCCCAGCAAGATATTCTCGCAATGCTCACTTGGTTCTGGCTTTGTCTGCGAGGTGATTGCAATGCCAGTATATCTATGTCCTTGATCATCTAGAGAGGAGAATGTTTAGCATTTCTCAGTTCGGTTTGGATTTATGTTCCAGAGAAGATTGATGGTTTTTCTTATGGGTTGGATTTGAATGTTGGCTTTGTAATAATTGATTTTGGCACAGTTTGAGGGAAATAGACTCTACATTCTTTGAAGAAGAGGATAAGGTCCATATCTGGCTCATTAAGAAAGCTTTGGGCTAGCATCATAAAGCAAcgttatagcctacagtacaacATCAAACTCCCACACCAAAAAACAGGCCAGAAGTATAAGGTTTAAGTCACATGAAAGACCATGATGACACACTGATCTGTGAAATCTGATTAAAACGCTTACAAACATGTCTCCTTTATGAAACTTTGAGTACCAGAGGAATCAGAAGAATTTATTACAGATATGTGGGAGGCAAAGGAAAGGAAAGACAAGACGCAGGCATTCCTTTGAACAACAATTAGTGCCTTTGCCAAACTGAACAGTTTCCAAAAATGAAAACTGTAGACCTAAACCAATTTGAATATACAAAAACTTAGACCAGAGTTTAATCAATTTCAATCCAGTTggagttggaagtttacatacacttaggttggagtcacaaAAGTTGTTTTTCAatcattccacaaatttcttgttaacaaactatagttttggcaagtcggttaggacatctgacacaagtaatttttccaacaattgtttaaagacagattatttcactttttctctgtatcacaattccagtaggtcagaagtttaaatacactgaattgactgtgcctttaaacagcttggaaaattccagaaaattatgtcatggctttagaagcttctgataggctagttgacatactttgagtcaattggaggtgtaccagtggatgtatttcaaggcctaccttcaaactctttgcttgacatcatgggaaaatccaaagaaatcagccaagacctcagaaaaacaattgtagacctccacaagtctggtccatccttgggagcaatttccaaatgcctgaaggtaccgcgttcatctgtacaaacaatagtatgcaagtataaacaccatgggaccacacagccgtcataccactcaggaaggagacacagtctgtctcctagagatgaatgtactttggtgcgaaaagtgcaaatcaatcccagaacaatagcaaaggaccttgtgaacacacatacaaaagtatatatatccacagtaaaacgagtcctatatcaacataacctgaaagaccgctcagcaaggaagaagccactgctccaaaactgacataaaaaagccagactatggtttgcaactgcacatgggaacaaagatcatactttttggagaaatgtcctctagtctgatgaaacaaaaatagaactgttttgccataatgaccatcttaatgtttagaggaaaaagggggaggcttgcaagccgaagaacacgatcccaaccgtgaagcacaggggtggtagcatcatgttgtgtgggtgctttgctgcaggagggactagtgcacttcacaaaatagatggcatcatgagggaggaaaatcatgtggatatattgaagcaacatctcaagacattagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaggcatacttccaaagttttggcaaaatggcttaaggacagcaaagtcaaggtattggcgtggccatcacaaagccctgactgcaatcctatagaaaatgtgtgggcagaactgaaaaagcgtgtaaggaggcctacaaacctgactcggtaacaccagctttgtcaggaggaatggaacaaaattcacccaacttattgtgggaagcttatggaaggctacccgaaacgcttgacacaagttaaacaatttatagacaatgccaccaaatactaattgagtgtatgtaaacttctgacccaccgggaatgtgatgaaagaaataaaagctgaaataaatcattctctctactattattctgacatttcacattcttaaaataaagtggtgatactaactgacctaaaacagggaatttttactaggattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttctgacttcaactcatTCAggaggataaaaaataaaaaaactatttatttcctaaattgactgaattaaaattgcattgaccccaaccctggtcaaCACTGCAGTATCTCCCTCACCATGATGTGTCCATCTCCAACTGCCCATCATCATATCAACTCCTTCCCAGCAGGACCCAGAGAGAGGCCCTTCCCTTACCGATCTCTTCTCCTAGAAGAGGCTCTATTATCTCCTGCCTTCCAGGACCACAACACTTCAGCACCACAGTCCCTGTAATCAGACCGCAGCCCCTCAGAGCCTGCCATGTCTCTGCTTCCTCAGCCATTCCCTCAGGCTTTCATTGCAGCCCTTCATACGGTGTATTGTATTCATACAGTGTATGTCAATTGTGCTGGCAGGCATTGGTTTTGTTAACACAATATGCACTCTGAATAACACTAACCTTGATATGAGGAGTGtgcattgtttattgttttgcgATTGAGACAGTCAATGTGGGCATTGGCAAGGGATATTTGTGTGCATCTTGCATTATACTATgttggaagtattcagaccccttttccacattttgttacgttacagcataattctgaaatggattcaatagtttttttctcctcttcaatctacacacaataccacataatgacaaagcaaaacatttttgccaattttacagttgaccggggcagctctagcagggcagaaatttgatgaactaacttgttggaaaggtggcatcctatgatggtgccatgttgaaagtcactgagatcttcagaaaggccattctactgccaatgtttgtctatggagattgcatggctgtatgcttgattttatacacttgtcagcaatgggtgtggctgaaatagccaaatccactaaatgaatgggtgtccacatacttttgtatataggaTGTATGTGTTcttgagagtctcacctttccacacaggggtcatattagtgtgtatcACAAAgtgttcagacgctacagacagaagttggcagagaGGTTGTATCGACTTCAGAGGACACCAtcgtgttcatgagagtctcctctttccagAGAGGGGTCATAATAATTTGTAGTCCAAACCTTTCGGACACTACAGATGATTtagtgagaagacagattttcgaGATGTCTTGTGGTCTGACAATACAgagctctagctctgtcacctttcactacAAGTGCAGAAATTTTTAGGCGGATGCGGTGGACATATCTCGagtttaaattgacagatttttatggggattttgtGTTATGCTAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501563 lncRNA downstream 2840 78229753 ~ 78230509 (-) True G443122
TU501490 lncRNA downstream 5114 78224562 ~ 78228235 (-) True G443067
TU501513 lncRNA downstream 68791 78163103 ~ 78164558 (-) True G443082
TU501124 lncRNA downstream 194752 78038321 ~ 78038597 (-) True G442759
TU501120 lncRNA downstream 196340 78036797 ~ 78037009 (-) True G442755
TU501589 lncRNA upstream 60485 78297768 ~ 78298784 (-) True G443147
TU501601 lncRNA upstream 89669 78326952 ~ 78327162 (-) True G443159
TU501602 lncRNA upstream 90913 78328196 ~ 78328428 (-) True G443160
TU501604 lncRNA upstream 94299 78331582 ~ 78331821 (-) True G443162
TU501606 lncRNA upstream 98194 78335477 ~ 78335918 (-) True G443164
XM_021604447.2 mRNA downstream 245694 77983744 ~ 77987655 (-) True glulb
XM_021604446.2 mRNA downstream 294348 77925215 ~ 77939001 (-) False znf648
XM_021604443.2 mRNA downstream 358506 77871765 ~ 77874843 (-) True gadd45ab
XM_036978450.1 mRNA downstream 591200 77627457 ~ 77642149 (-) True LOC110524609
XM_021604434.2 mRNA downstream 593555 77627457 ~ 77639794 (-) False LOC110524609
XM_021604453.2 mRNA upstream 2485 78239768 ~ 78245830 (-) True LOC110524621
XM_021604464.2 mRNA upstream 145722 78383005 ~ 78387067 (-) True hyi
XM_021604478.2 mRNA upstream 981870 79219153 ~ 79226639 (-) False LOC110524635
LOC118964722 mRNA upstream 1005964 79243247 ~ 79282591 (-) True LOC118964722
XR_005051973.1 mRNA upstream 1056976 79294259 ~ 79294385 (-) True LOC118964780
TU501172 other downstream 151339 78081745 ~ 78082010 (-) True G442807
TU500657 other downstream 606135 77623299 ~ 77627214 (-) False G442381
TU500354 other downstream 826214 77406742 ~ 77407135 (-) True G442115
TU499853 other downstream 1211974 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 1330578 76902382 ~ 76902771 (-) True G441483
TU502514 other upstream 727348 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 985857 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other upstream 986720 79224003 ~ 79225868 (-) True LOC110524635
TU503246 other upstream 1493704 79730987 ~ 79731536 (-) True G444691
TU503706 other upstream 1745178 79982461 ~ 79987704 (-) False G445115

Expression Profile