RNA id: TCONS_00032023


Basic Information

Item Value
RNA id TCONS_00032023
length 499
lncRNA type inter_gene
GC content 0.51
exon number 5
gene id XLOC_016236
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14394120 ~ 14426667 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCGCCATAGTGTGGTTAGTAATTACGCGACCCTCCCACACTTCCATTCTCCGTTCAACGGCTGTCCTCAGCATCCCCTCAGTGGTGATGGCGTGTGTGGATGCTGCTAATGCGGCGGAGCCTGGGGCCTAACCAAACCGGTTAACGTTACCGGGGAACTCAAGAAACGAGGACGTGCGGTGCTGGGCATTATGAGCCTTACCTTCAACGGCCGGCTCCCGGATCACTGCTGTATCTCATGTCAGGGTGTTTGTTCGCGTGAAACCAAGGAATGAAGTGCTGCAACCATGATGCAAGGACTGAAAAAGCGTACCCGAAAGGCCTTCGGGAtacgaaaaaaagaaaaggacagTGACTCCACtggatCACCAGACAAGGAAAAATCAaaaaaaacTAATGGGGCTCCTAATGGCTTCTATGGTGAGATTGACTGGGATCGATATAACTCTCCTGATGTGGATGATGAGGGGTACAGTGTTAAACCTGGAGAACAAGGGG

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0048666 neuron development biological_process
GO:0048699 generation of neurons biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032018 lncRNA downstream 122045 14271716 ~ 14272075 (-) True XLOC_016234
TCONS_00032015 lncRNA downstream 364959 14021956 ~ 14029161 (-) True XLOC_016233
TCONS_00032014 lncRNA downstream 383462 14009630 ~ 14010658 (-) True XLOC_016232
TCONS_00032013 lncRNA downstream 384592 14007938 ~ 14009528 (-) True XLOC_016231
TCONS_00033789 lncRNA downstream 389178 14002395 ~ 14004942 (-) True XLOC_016230
TCONS_00033790 lncRNA upstream 12318 14438985 ~ 14440380 (-) True XLOC_016237
TCONS_00032026 lncRNA upstream 63275 14489942 ~ 14491843 (-) True XLOC_016239
TCONS_00033354 lncRNA upstream 87499 14514166 ~ 14515594 (-) False XLOC_016240
TCONS_00033355 lncRNA upstream 87870 14514537 ~ 14515392 (-) False XLOC_016240
TCONS_00033356 lncRNA upstream 87940 14514607 ~ 14515594 (-) True XLOC_016240
TCONS_00032019 mRNA downstream 3493 14276639 ~ 14390627 (-) False XLOC_016235
TCONS_00032020 mRNA downstream 6785 14278841 ~ 14387335 (-) False XLOC_016235
TCONS_00032022 mRNA downstream 6785 14278898 ~ 14387335 (-) False XLOC_016235
TCONS_00032021 mRNA downstream 6785 14278898 ~ 14387335 (-) True XLOC_016235
TCONS_00032017 mRNA downstream 122037 14208158 ~ 14272083 (-) False XLOC_016234
TCONS_00032024 mRNA upstream 17609 14444276 ~ 14571577 (-) False XLOC_016238
TCONS_00032025 mRNA upstream 18681 14445348 ~ 14587224 (-) True XLOC_016238
TCONS_00032027 mRNA upstream 228467 14655134 ~ 14656669 (-) True XLOC_016241
TCONS_00032028 mRNA upstream 363627 14790294 ~ 14798295 (-) False XLOC_016245
TCONS_00032029 mRNA upstream 364710 14791377 ~ 14798305 (-) False XLOC_016245
TCONS_00031998 other downstream 1139323 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00031991 other downstream 2169581 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031983 other downstream 2731197 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031958 other downstream 3488941 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 4646689 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00032033 other upstream 567726 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 601979 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032040 other upstream 675436 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032063 other upstream 2082157 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032069 other upstream 2189273 16615940 ~ 16616055 (-) True XLOC_016267

Expression Profile

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