RNA id: XM_021606185.2


Basic Information

Item Value
RNA id XM_021606185.2
length 2501
RNA type mRNA
GC content 0.56
exon number 5
gene id LOC110525767
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31973832 ~ 31984689 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCACCCTGCCGCAGTCTGCATCCAGCTTAGAGATGAGCTACCCACTGGACTACCTCTACGGCCACGGATCCTATCGCAGGACACCACAGGGACACTCTGCCCGGCCCGCcgcttccctctcctcctccggcTACCACTCCCAGCCATGGACGACCTCCCAGCGCCACCGCCCGGCCTACAGCCAGGCAGCCTCTGCCGACAGCTTGGAAATCTTTAATGGCGACATGACTCGGAGGAACGAGAAGGAGATTCTGCAGACACTCAACGACCGGTTCGCCGGTTACATCGACAAGGTGCGGAACCTCGAGCTGATTAACTCGAATCTGGAGCAGGAAGCGGCTGCGCTGCGACAGAGCCAGACCGGGCGCGCTACCGTTGGAGAGCACTATCAGCGTGAGCTGGGGGACCTGAGGGTTATGGTCCAGCAGTTGACCGGGGAGAAGGCACGCACACTCTTGGAGCATGACCACCTTGAAGAGGACATCCAGCATGTGCGGACCAGGCTCGAGGACGAGGCACGCAGCCGGGAGGAGCTGGAAGCCGCAGCACGCGTCATGAACAAGTATGTGAATGAGTCTGGGCTTGCACGGCTGGAGCTGGACAAGAAGCTGTTCGCGCTGCAGGAAGAAGCCGCGTTCCTGAAGAAGAACCAcgaggatgaggtggccgagatGCTAGCACAGATCCAGGGTACACAGGTGAGGTTCGAGGCTCGAGACACGATCAAGGCGGACGTGACGAGCGCGCTGCGGGAGATCCGTGCTCAGCTGGATGGCCACGCGACCAAGAGCGCAATGCAGGCAGAGGGATGGTTCAAAGTGCGTATGGAACGGTTGGCGGATGCAGCTCACTCTAATACGGATGCAATCCGCGGTGCCCAAGAGGAGATAGCCGAGTATAGACGGCAGCTGCAGAGCCGCACCATCGAACTGGAGACCCTCAAAGGAACCAAGGAGTCTTTGGAGAGACAACGCATGGATAGTGAGGACAGACACCATGGGGATATCCACTCCCTACAGgagaccATCCACCAGCTGGACGGTGAGCTGAAGAGTACTAAGTGGGAGATGGCCAGTCAGCTGAGAGAATATCAGGAGCTGCTGAATGTCAAGATGGCTCTGGATATAGAGATAGCTGCCTACAGGAAGTTgctggaaggggaggagactcgGTTCCTATCTGGGCCAAGCCTGTTCTCCTACTCCTCCGTTCACCTTAAGCTTAAGGGGGAGGAGCTCTCAGACACAGTCATACTGGAGGAACAGACGGATGAGACACAGGTCACTGAGGtgacagaggaaggagaggaagagaagggcgaagagaatgaagaggaagtaaaggatgaggaagaggatgagaccAAAGCTGaggtaggagagggggaaggatctgaggataagggaggagaggaggaagagggtgttaaggaggaagaggaaggatctgaggataagggaggagaggaggaagagggtgatAAGGAGGAAGGGGAAGGATCTGAGgataagggaggggaggaggaagagggtgataaggaggaagaggaaggatcTGAGGATAAGGGGGAAGAGGAGTCaggtgaggagaaagagaagTCTAAGTCACCTGAGGAGGCTGCTTCTCCATCTAAGTCTCCCACCAAAACCCCCCAGCCCAAATCTCCCGCCGTCAAATCCCCTGAATCCAAATCACCCCCAGCCAAATCTCCCCTCCCCAAATCACCCGCCAAGTCTCCTGCCCCCAAATCTCCCACGGAGAAATCTCCCCAGCTCAAATCTCTGGCTGTGAAATCACCATCTAAATCTCCCCCTAGCAAATCCCCAGAGTCTAAGTCCCCTCCTCCCAAGTCCCCCCTCCCCAAGTCTCCTGAACCCAAGTCCCCCATCCAGGAGAAGGCCAAGCCCCCTGCAGAAGACAAACCAGccaaggaggagaagaaggagaaggaacaACCCCAGCCTGTAAAAGAGGAGAAGAAACAGGAGCCAGAACccaaggagaaagagaagagtggGAGCCAGCCTAAAGAGAAGGCTGAGGAGAAGACAGACAAACCAGATCCCAAGAAGGAGAGCAAGCCAGAGGAGACCCCAACACCTGCCCCTCCTGCCGCCGCCTTGGCCAAGCCTGCAGAGGAGAAGCCCGCCCCCGCCAAGGAGAGCCCCACCCCTGCTAAGAAGGAAGATGAGAAACAGGCCCCATCCAAAACAGACGACAAACCTCAGGCAGAGTTGAAGCCTGCCCCCAAAGAATCACCAGAGAAaacagagagcaagaaagagaagaAACCAGAGCCCaaagaggaggtgaaggaggacAAGCAGGAGGCCTCTAAAGGGTCTGACAGTAAAGAGGTTAAGGATACGAAGGTGGAAGGGAAGGCAGAGAAGGACGAAAAGTCCTCCAGCACTGAGGTCAAAGAGAAAGCCATGAAGTGAATCACTAACGCGTTGTGTatgagccgagagagagagacagagagagagagagagagaca

Function

GO: NA

KEGG:

id description
K04574 NEFH, NF-H; neurofilament heavy polypeptide

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564429 lncRNA downstream 214380 31759147 ~ 31759455 (-) True G496801
TU564417 lncRNA downstream 268790 31704664 ~ 31705045 (-) True G496789
TU564404 lncRNA downstream 304199 31669254 ~ 31669636 (-) True G496776
TU564403 lncRNA downstream 305478 31668033 ~ 31668357 (-) True G496775
TU564399 lncRNA downstream 313888 31659480 ~ 31659947 (-) True G496771
TU564565 lncRNA upstream 9769 31994458 ~ 31994683 (-) True G496919
TU564566 lncRNA upstream 10587 31995276 ~ 31995499 (-) True G496920
TU564588 lncRNA upstream 39239 32023928 ~ 32024730 (-) True G496932
TU564607 lncRNA upstream 98198 32082887 ~ 32083103 (-) True G496950
TU564613 lncRNA upstream 108759 32093448 ~ 32093762 (-) True G496956
XM_021606187.2 mRNA downstream 26442 31944549 ~ 31947393 (-) True srrd
XM_036979899.1 mRNA downstream 69885 31866928 ~ 31903950 (-) True LOC110525764
XM_036979898.1 mRNA downstream 91565 31866928 ~ 31882270 (-) False LOC110525764
XM_021606180.2 mRNA downstream 108994 31860166 ~ 31864841 (-) True si:ch211-113d22.2
XM_021606178.2 mRNA downstream 116547 31828730 ~ 31857288 (-) True LOC110525762
XM_036979915.1 mRNA upstream 37052 32021741 ~ 32032081 (-) False LOC110517556
XM_036979914.1 mRNA upstream 37052 32021741 ~ 32032585 (-) False LOC110517556
XM_036979912.1 mRNA upstream 37052 32021741 ~ 32032975 (-) False LOC110517556
XM_036979913.1 mRNA upstream 37052 32021741 ~ 32033670 (-) False LOC110517556
XM_036979916.1 mRNA upstream 42366 32027055 ~ 32032977 (-) True LOC110517556
TU564492 other downstream 81186 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 301908 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 312217 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 1398262 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 1424385 30545402 ~ 30549450 (-) True G495554
TU565305 other upstream 695353 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1342818 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 1347961 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 2055670 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 3780677 35765366 ~ 35767929 (-) True G501142

Expression Profile