RNA id: XM_036979914.1


Basic Information

Item Value
RNA id XM_036979914.1
length 1303
RNA type mRNA
GC content 0.57
exon number 4
gene id LOC110517556
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32021741 ~ 32033670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACACTGAGAGAGGCGTTGTTGTCTCTTGACATATTTGCCGGCAATAGTCTACAATTAGCCTACCTGCCGGAACAACGACAGCAAAATTCGGTGCGGCGCAGATCGGCTCTATAATGGATGACAGagtgccagggtgtgtgttgggggtcaCAGAAAGGTCGTTGCCATGGGGAAGGACTACTATAAGACGCTGGGTATCCCTAAGGGTTCTAACGAGGAGGAGATCAAGAAGGCATATCGCCGCATGGCACTGAGGTTCCACCCAGACAAGAACACAGACGCAaatgcagaggacaagttcaaaGAGATCGCTGAGGCCTACGAAGTTCTGAGTGACCCCAAGAAGAGGGTCATCTATGACCAGCTAGGAGAGGAggGTCTGAAGGCGGGGGGCAGTAGTGGTCAGTCTGGGGTTCCTGGTGGGTCGTACCACTACACCTTCCATGGGGACCCCCATGCCACCTTCGCCTCCTTTTTCGGCGGGTCCAACCCCTTCGATATGTTCTTCGGACCGCACCGCAACCACCACAACCGCTCCAACGGCGTCCACTCCAAGGTCCCCAACGACCATGACATGGAAACAGACTTGGATGAGGAAGACCCCTTCGCCTCTTTCACACACTTCGGCTTCCCCGGGGGGGTCAACGGCTTCCCTGGCCATGGTGGGGGCAGGAGGAGGGGGGTGCAGTCGGAGCGTTTGGGGGGGTCCAGGAGGCAGCAGGACCCCCCGGTCGTCCACGAGCTGAAGGTGTCTCTGGAGGAGATCTTCCATGGTTGCACCAAGCGGATGAAGATCACCAGGAGGAGGCTGAACCCTGATGGCAGGAGCAGCTGTACGGAGGACAAGATCCTGAACATCGTGATAAAGAGAGGATGGAAGGAGGGCACCAAGATCACCTTCCCTAAGGAGGGGGACGAGACCCCAGAGAACATTCCTGCAGACATCGCCTTTGTGCTCAGAGACAAAGGACACGCCCACTTTAGGAGAGACGGCTCCAATATCATCTACACAGGCAACATCAGTCTGAAGGAGGCGCTGTGTGGCTGTACGGTGAACATTCCCACCCTGGATAACCGCGTCATCCCGCTATCCTGCCATGAGGTCATCAAGCCTGGGACGGTAAAGCGGCTGAGGGGGGAGGGCCTGCCCCTCCCTAAGAGCCCCACTCAGCGTGGCGATCTCATCGTAGAGTTCACGGTTCGCTTCCCAGACAGGATCCCTCCCCAGTCCAGAGAGATCATCAGACAACACCTACCCCAGTCTTAggacaacacccccccccccgactcattaccccctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564566 lncRNA downstream 26242 31995276 ~ 31995499 (-) True G496920
TU564565 lncRNA downstream 27058 31994458 ~ 31994683 (-) True G496919
TU564429 lncRNA downstream 262286 31759147 ~ 31759455 (-) True G496801
TU564417 lncRNA downstream 316696 31704664 ~ 31705045 (-) True G496789
TU564404 lncRNA downstream 352105 31669254 ~ 31669636 (-) True G496776
TU564607 lncRNA upstream 50302 32082887 ~ 32083103 (-) True G496950
TU564613 lncRNA upstream 60863 32093448 ~ 32093762 (-) True G496956
TU564614 lncRNA upstream 61895 32094480 ~ 32094720 (-) True G496957
TU564617 lncRNA upstream 64854 32097439 ~ 32097682 (-) True G496960
TU564621 lncRNA upstream 67690 32100275 ~ 32100560 (-) True G496964
XM_036979904.1 mRNA downstream 37052 31973832 ~ 31984689 (-) False LOC110525767
XM_021606185.2 mRNA downstream 37052 31973835 ~ 31984689 (-) True LOC110525767
XM_021606187.2 mRNA downstream 74348 31944549 ~ 31947393 (-) True srrd
XM_036979899.1 mRNA downstream 117791 31866928 ~ 31903950 (-) True LOC110525764
XM_036979898.1 mRNA downstream 139471 31866928 ~ 31882270 (-) False LOC110525764
XM_036979911.1 mRNA upstream 16602 32049187 ~ 32071760 (-) False epg5
XM_036979908.1 mRNA upstream 16602 32049187 ~ 32071847 (-) False epg5
XM_036979909.1 mRNA upstream 16602 32049187 ~ 32071847 (-) False epg5
XM_036979910.1 mRNA upstream 16602 32049187 ~ 32071847 (-) True epg5
XM_021604983.2 mRNA upstream 41538 32074123 ~ 32080766 (-) True LOC110525023
TU564492 other downstream 129092 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 349814 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 360123 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 1446168 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 1472291 30545402 ~ 30549450 (-) True G495554
TU565305 other upstream 647457 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1294922 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 1300065 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 2007774 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 3732781 35765366 ~ 35767929 (-) True G501142

Expression Profile