RNA id: XM_036979909.1


Basic Information

Item Value
RNA id XM_036979909.1
length 8753
RNA type mRNA
GC content 0.55
exon number 47
gene id epg5
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32049187 ~ 32071847 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCACTTTTTGTTGTACGTAAAGATAGTGCTGGAGTCATGTGACGAAATATTATCGCGATAACTGTTTCTTCCTGGAGCAAAACAAATAACAGCTGATGTGTTGCCAAATGTCACTTCGCTGGCGTTGATCACATTGTTTTACAAAGCTCGAGACTGGTCTGAAACCACGCCTATTTGCTAACAAGAACCGCCTTCATGTAAAGATAACACAGACATCTAGGTCCTTGTTTATCATCAGAAGTCACAAGCCTTAGGGTGAATGTGGTGAGAGGAACAAGGTGTGAAGGATATGACAGATGGAGGCTGTGAGACAAAAGAAGTCCAAGACCAGTAGCAGGTCTCAGGACAGAAAACAGAGGCAGAGTGTACGAGTGAAGAGTCCCACAGCTCTCTCTGCTGGTTGTGATGAGAAACCTGGTGCTGCTGCCCCGCCCAGCTCTGAGTTCACAGACATCCCCCTCAGTCTGCCCAACGAGGGGACAGAGCAACAACAGGGTCTGGCAGAGGCATCAGAGACTTTATCAGAGACATCACAACCATCAACACAGATATTACCACAGACATCAGAGGAACCATTACCAGCATCACAAACACTATCATCATCCACATTATCACAGACATCATCATCAACCTCACCCCAGAAACTAGAAAAGCCCTCTGAGACAGAGCCAGAGAAGAggaatgaggggagaggagaggcccaAGGGGCTGAGCTCAGAGCTGAACCACCGAGCActgaggtggggagagagacccAAAACAAAACCCACATCCAGACTCAGGCCTGCATATCTACCACGCTTGAGACACCCTTGGCCCCCAGCGCTCCTGCCCTCTACCCCTCACTACCCACACTGGAGGAGGGTTCCCTGATGCAGCTGCATAAGGAGGCTCTGCGGGCCTGTGGGACAAGGGGCCCTGCTGTTCTGCCTCTAGGGGAGCAGGAGTGTCCTCTCAGTCTGGAGCCTGTTGTGGAACTAGCTCCATCTGAGGGCTCCAGGACCAGACTGTACCCTGAActaccccagcccagcccagaacTACAGGCATTCTCGTTGGAGCAGCTGAGTGTGTGGGAGCCAGgtggggggatgtgtgtgtgggtggagggggtggaggtgTGTGCAGCCCGGTTTGCAGTGTTGGCCCGGCAGGAAGGCCACGAGCTGACAGAACTCCTGCAGAATTACTGGCGCTGCCGCAGACagctgacacacgcacacacacagctccacacacacacctccgacTGTAACACCACACAGAACCGACTCTGGAGCTTCAGAGATGAGCAGCTCACACTTCAGggtgtgtgtggggaCCAGTCTAAGGTGTATGGCTACCACCGCTTCCAGCAGGCTGACTTCAGTGAGGCTGTGTTGGTGGAGCTGCGGAAGCTGTTTGAGGCCCGCTCTGAACTCCTGCACCAGAAGGTGGCGCTGCACGCATACACAGCTCTGCTGTCACGTCTTCAGGTGGAGTCATACTTACACTGCCTGCTCCACGatatgtgtgGTACCCAGAGTCAGCCcagctccctcctccctctgaaGGAGAGCATCAGTGTTCTCTTCAGCTTCACACGGAGAGTCCTGGACGACACGCAGTTCCAGACAGACATCCACCTCTGGCTGCAGAGactgGTGGCAGTGTTACTGCGTGTGGGGGGATCAGGAGAGCACCTCTACCTGTTGAACCATCTGCTGTGCTGTTCTGCAGGGGTGGGCAAGTGGGCTGCAGCCTTCTTACAGATCCAGGTCCTAGGAAACCCCTCAGGAGTACAGCAGTTCATGCAGGCTCTGGCCATCCTCATGTCTCCAGTCAGACACCGGGCTGAGTTCATGAGCCACATGAAGCCCTGTGAGAGTCAGAGTGCTGCAGCCTCCGGCCCTGAGTCTGGCAACTGGACCCTAGTGGATGAAGGTGGAGAGGAgGATGAGGACCCAGAGAGCAGCTGGTTGTTACTGTGTGAGGAGGACCTGATCTCTCTGCTGTCCCAGTTCCCCTTCCAACAGCTCTTCACACACCTGCTGGAGATGAGCAAgaaggGTGTCTATGAGCCCAAGTCCTGCTCCAGTCAGAAGATGATGCGTGTGTTTGCGTTTGCCTCGTCACTGATCGAGCTGCTAGCTGTGGGTCTGAACACCTACGACAGCGCTCGCTACCGCCAGCTAGTCAAACGCATCGGACACACCATACGGATGACGGTGTGTTATGTCAGTGATCACTGGGCCCAGTATGTGAGTGTTGCTGGTCCAGCCCAGCCCAGAACCATCTCTCTGGAGAAACTACAGCTAGAGTACGACCATCTGTTCCTCAGAGCTGTACTACACGTCCTCAGAAACAAGAGGTTGGGTATCTGGCTGTTCATGTCAGAGATGCCCTACGGAACCCTGTCCAGTTCCATGCTGTGGAGAGTTCTGTACGTGATGCAGTGtgcagagaccgctgcaccggaCGCACTCAACTCTACAGACAACACATACACCTGCCTACAGGCCctcagagAGCCGAGTCaccaggagaggtttgagaaatGGCTGTGTGAGGtcaacagttctgatggaatctCTCTCCTCACGGCGCTAGCTCACATGGCCATGCCCACCCACCACTCTGACCCCACCTTCATTACCACTATAGCTCTCCTCGTCTTCCAGGTGTCCTATGTCAGTGTGTCTACGAGGGAAACCTACTCGAAGGTGGGGCGGGAGCTGCTGGCCGCCATAGCAACCGTTCATCCTTACATCATCTCAGTCCTGCTGGACAGACTCAGAGAGACCATCGAGACAGTCGGTAtgGTGGCACTGTACCTCAGTAAGGAGCTGCCCCTGTTCCTGTGGCGTCCTAGCCCGGAGGAAGTGTGTGTGATCGGGGGCTGGCTGCTCCAACACCCCCTCTCTGCTGTGGAGAACAGCCTGGCCTGTGTTCTACTGGAAGGGCTGGACTGGGGCTACACAcagGATGGGACTCTggccctgccctcctctctccacagTGAAGTTGCTCTGCTGGTGGCAGAAGCCTATCAGAAATACCTCACAGACAAGCCATACAATGGACTCATCTCAGAGGGAATCAAACAGGTGTCCTACCTGGCTAGTGTTCTCCGTCTGGGTCTGTCACCTGAGGCTTCCTTCAGCCAGTGGGCCTGGCAACTGTTGCTAAGGCTGAAGCTCCATGGCAACACCCAGTACCCTCAAGCAGCCTGGTCCACCCCCGGCTCTGCCCCCAACCCCTCTCCGGAGCTCACGCACGCCCCAAACATGCACCCTGTTCTAAGGGCCGTAAAGGCGGGCCTTCCCATTGGCTGCTACCTGGCCATTGCCATGACAACTGTAGGACACAGTCTGGAGGTGTTTTGCACAGAAGGAGTGGATCTGTTGAAGAACCTGATTCAGTCTCAACATCTGAGAGCTGCTGTCCATCTCCTGGACAACATCCTCCCTCCTACCTACCCTCTCAGCTTCTACCTGCTGAAGAACACACAGTTTGTGGGCTGTGTCCAGTTGTTCCTGCAGTGTGACGGTGTGTGTCCTCAGGGTGTAACGCAGCAGGTCACCCACAGGGTGGCGCCACTCTTCACTGGAGGCACCTATGGGGACATGGTACGCCTGCTCAACAGTGTCATACAGACTCACGTGGTGGAGAGTTCGAGGCCAGGTCGTGTGGGTCCGGCAGCGGTTCTAGAGTTCTGGGTGGGAATTCTTACCCAGCAGAACCTGTGGTACCGAGACAGGACCGTTCTATTCCTGATGGAtcagatctgtcgttctgccttcACACACCACCAGGAGGAGTGTGTACAGAGATTACTGTACCAGCAgcacaagATTGCTTTAGGTTACCATGGAGACCGGGGTCTGCTCTCTTCCCTGGTTGGTTGGATTGCTGGAAATGCCACACCCTCATTCATTGAGGGCCAATCGCTGAGTGGGGAGGTGTGGTTTGCGTGGCTGGTGTTGAACATGGAGGGGATGTTTGAGGAGGATTCTCAGCTAGGACGCTGTGTGGAGCATGAACTACTGTCTGATCCAAACCTCTCACCTGACCAGGCTctgaagAAGGCCCAGCAGAGGTTGAAGCTCCCAGTGGCTCCATCTCTGCAGCGGCTGCAGGTGTACAGGTGGGCGTGTCAGGCGTTGTCCACACCCCCTGACCACCCGCTACTCCCCCTCGTCTGGCAGAGGTTCCTGCAGCTCTACCTGAGACAGCCAGGACCTGAGTATggTCTGGATGCAGGGGGCTGTATTGGTCGTCGGTTCTTCCAGGGCTCGACTCAGGCTGTGTTACTGAGAGATCTGAGACAGAGACTACAGGAGGTGTCTGACTTCCACCACGCCGCCAGCCAGGCCCTGAGggtgccccccacacacacacccagccaggGTGAGGACCGCCCCAACTCCCCTCCACATCTCTTCCTCACAtccccacagatacacacagagctGGTCAGgctgtttggtgtgtttgcCGTGTGGTTGGACGATGAGACTCTTCAGAAGAAGGAAGTGTATCTGCCCTCTCTCCCACCACAGTATGACCCCCAAAGACTGGCCAAGGTCATGCACAagcaacagGAGCTGTGGGTGGAGTATGTGGACCAGGAGCGTGTCCAGTATGATGAGAGGGAGGTGCTGGATCTCTGGGACAAAGTGAAGAATGAACCCACCTTCATACAGAGCAACAACCCTGCCTTCACTGACTACACCAACCCCAGCGCAGCGAGGAAGCGTATCCAGTCTAACCTGCAAAAGCACACTATCCCTCGGCCGCTCCCCGAGCTGCAATCACAGAGAGCTCCGGTACCAGAGGTCCCCTCTGCCTGCCTCGCTGACCCTGCTGCTGCCTCCACTCTCCTACAGCAGGACCTCTGCTGTCTGCAGGAGCaggccagGTTTGCAGTGTCTCGGGAGGCCCAGCAGGTGGCGTTGGAATCAGAGCTGCTGGAGAGTCTTCCTCTACTCTACAGGAACAGGCCAGAGCAGGTTACCATGGCGCTTGAGTGCAGAGGGCAGAGGGGGGGCCAGCCCTGCCAGGGAGCGGCACACATCACTGTCACGtgcgaGTGTGTACAGAAGCAGGAAGCAGTGGAGAATCAGATCGTGTCTCTGAGAAGCGACATTAAGCAGCTGCAGACGGAAGCCAAGACTCCTCCCCCTCAGAGCCTTGCCCAGGCTGCAGTACACACAGAGAAGTTCATTactgctcTGGTGAATTTGTACAAGGCCAAGCCGACGGCAGCAGTGCAGAGTGTAGGAGTGGCTGCCTTCTACAAGGTGGTCTCTTTCGTCTGTGAGGACACACTCCGCCACCCACCCACTCGCCAGTACCTCTCTTCCTGCGTCGAGATACTGGGAcaggtttTTATCCAGGGCAACCAGGCAGAGTGCGGGCGTGTCCTCAGCACTATCCTGGAGCAGAGACGTCtgtgtcccctcctctcccccttcttcaCCCCAAATGCAGCACCCAATCAGCTTGTCTCTCTCTACAAGGAAGTGGTGACATCACTGCACCCTGACAGCGCTGACGTCATCTTCATGCTGCTCACTAAGTTTGACCTGAGTACGTGGCTGAGTAAGGCCGAGCCAGTGTTCTCGGAGCGTAGCAGACTGGTAGAGCTGGTCCACACTGCTCTGTGTTCCTGTGGCCGTGACCCCGAGGCTGACCTCCTCACGCCCTTTCACCTCTTCACACGACACTGGACCCTGTTGCTCAGACACCACTTTCCTGACCACTACAGCGACTGCCTGCGCCTGCTCATGACCAGTTCGACAGAGCAGTTGCTGAGCCCAGAGTGTTGGAGGGTGACTCTGTGTGTGCTTggcgtctctcctctcccctgcaacACCAAACCCACAGCAGAGCCTTCCGGTACCGCAGATACCCCCAAACCCACATCCATCTCCCCCAGCCAAGCCcccatcaccctctctcctcagcaGGTGGAGGAGACGGTTGATTGGCTGTGTGAGTATTTTCAGCGTTGTCGTCTCAGTAAGCCGGACCTCCGCAGCTTTGGCCTTTACTCCGCCTGGGCGCCATACGTCAGTGAGGTCACCACGTTCTGGGGATATCTGATTGGTTACCTCATCGACCTGCAGCTCAGCGCCTGCTCCAGGGAGCCACTGGGGGGAGCCAGAGTGCTGAAAGcccTGCAGGATCTACACGGTAAGATGGTCCGGCTGTTTAAGCCCTGGATCCTGGTTCTGGAGACAGACGATGTCAGtaaTCCGAGGTGTTATCCCTGGTTGGAGTCAGACGCCAACGCTGCAGGCTGTCTTGTGGATCTCTACACCCAGCTGACCCAAACACTACACCACAAGTTCAGAGaccgCCTCCTCCCCGGGCAGCGTGGAGCTCTGTGGCTGTGTCTGATGCAGTACTGTGACAGCTGCAGCTCTCCTCGTACACCAGAGTACCTCCTCTACCTTTACCACACACACCTCGGCAGCCTGCCCTGGACACACCTGCACCCCGATACACACCTCATGGAACAGCTGTTCAATGTGGAGAGAGGAAGTCCTAAGAGCTGCTTCCTGTTCCTAGGGGCAGTCCTCTGTAAGGTCAACTGGGTCAGCGTTCTGAGTGACAGCCTGCAAACTCCAGCCAGCTCtaacactaacatacacacagactcacacaagATGCTGGTCTATCTACTCTACATGCTGGTGTTCCTCACTAAAGAAGAGCAGCTTCTCAGCCAACCGgaCTCCCCTCTCCTTAGTCTGTTGGTCCAGTCTGTCTCCCTGCCATGGCACCAGGTGGACCATTCCTCCTACCAAGGGATCATGGGATATGTAGGCACCCACTACCCTCACGCTCTGCTGCTCAGCGCAGACTCCGCCGCTCAGACACTGCTCCTATCACTACGCAGTGCTGCTGGGCTGCGGCCACGCCCCCATGGGATGCCATACCGGgaggAGACGTTgaaggctagtgtgtgtgtgcgctggtgTGTCCAGTGTCTGGTCTCTCTGGAGCAGAGTGGTAGCATCAGTCTGGCTAACCTGGAGACGCAGTTAGAGGCACTACTGGAGAGCATCATCACCTTCAACCCACCTGAGGTGGGCTTGGAGCAGAGACACATGGCGTTCTGTAGTCTGTTCTGTGATTCGTTGGCTCTGCTGAACGGAGTGGGCGTGTCTACAGGCGAGGCCTTGGCAGCTCGTGTCATTGGCTGGCTGGACAGGAAGGGGCAGGGTTTCCCAGTGCTGCCGCTCCTGACAGCCTGCTCCCGTTGCCTAGCGTCCGTACGCCACATGACCCGCATCACCGAGGCTTGCATCACCGCCTACTTCACCCATGCGGAAGAGGAGGGTGTCGGGTGGGGTCCTGTGTTGGCATCCCTGCAGGTGCCTGAGCTGACCGTGGACGACTTCCTGTCTGAGAGCCAATCAGGAGGCAGCTTCCTGACACTCTATGCTTACATCCTGCAGCGCCTCAACACGGAACACACAGTGGCCAATGAGAAGAGGACGCTCGCTCTACTCAACACATGGAACAGTCAGGTCTTCCCCAGtGGTCCCTATGATGAGGCTAAGTTGTTCCTCTGGTGGCACAAggccctgtgtgtgtatgtggagcaTCTGCAGCAGGGGCTGGGGGAGGTTCCAGCCGTGGTAGCGGGGCTGCTGCGGCTGCAGACACGGCTCTctcagatgggagaggagagactcGGCTCAGGACTGCTGGGGGCTATAGGATTGGGCCGCCGATCACCCCTATCCAACAGGTTCAGGGTGGTGGTGCGCAGTCTGTCTGCGTTTCTCTCAGTCCAGATTCCCTCAGAGGACCAGGTCCGCCTCCAGCCCAGCACCGACCAGCAGCTGACTGCTAAAGcacaacagGCTCTGGTTGTGTTGGAGTCCATGCCCAGCAGTAAACAGTATGCTGGCCTAAAGGACTCAATAGGAAAAGCTGTTCAGTTCATCCACTACCCAGGACACTGTCTTAGAGATGGACCTTGCCTCCTTTCTCTGCTGGCCAACCTCCTCTACCCAGACCAAGGATACCTCAACATCATACGATAGCAGCGCCAGTTAGCATCGGCTAGCACTGTGACACAGTATGCTAAACAAGAAAAGTTAGAAACAGCAGTCTATCCTGTGGTGAAAGTAGGGAACTACATGGGGAATATAGTGTCATTTGAGATGTGCACCGATATGCTAGTAGCCTACTAGCCATCGAATGCTGGAGCTGGACTGATAGCCATAATGGACTGGATCTCAACAAAGAACATGATTTGACTGCTAGTGATTGTGACACAACTATAAGTTTATCAGTTAAAGGTCTAGTTTATTAGAGTGTGATACttaacgcttgatctgattgaatctatgCCTATCTGGCAATAGCCGACGAccgcatagctgatgttttggccGTGTATGAAGTGTAACCACTTTGGAGCTGTCAAACCGGTGAGTGGCTGCTCTTGATCATCGTCACGAAGCCACACCCGTCCCACTCGCATTAGTTCAGAACGAAAAGGTCTAGGCTATGTAGAAATAATTAcgctcaaattgaaaatcattaaGGATTTCTAtcttacatctcacattccagtgtttgaTCTTGTAAAAAGactgcatgggatttctcttaCTGGTAATgccgctttaggtataatgccaggagccactTGTGTATTTGACAGCAATAAAGCAGTTCCACCTCAGACACTGTCAAAACGACCGGATGTTGGCTAAATCGGATCTGATTAAATAGAGCCCTTACTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564588 lncRNA downstream 24457 32023928 ~ 32024730 (-) True G496932
TU564566 lncRNA downstream 53688 31995276 ~ 31995499 (-) True G496920
TU564565 lncRNA downstream 54504 31994458 ~ 31994683 (-) True G496919
TU564429 lncRNA downstream 289732 31759147 ~ 31759455 (-) True G496801
TU564417 lncRNA downstream 344142 31704664 ~ 31705045 (-) True G496789
TU564607 lncRNA upstream 11040 32082887 ~ 32083103 (-) True G496950
TU564613 lncRNA upstream 21601 32093448 ~ 32093762 (-) True G496956
TU564614 lncRNA upstream 22633 32094480 ~ 32094720 (-) True G496957
TU564617 lncRNA upstream 25592 32097439 ~ 32097682 (-) True G496960
TU564621 lncRNA upstream 28428 32100275 ~ 32100560 (-) True G496964
XM_036979913.1 mRNA downstream 15517 32021741 ~ 32033670 (-) False LOC110517556
XM_036979916.1 mRNA downstream 16210 32027055 ~ 32032977 (-) True LOC110517556
XM_036979912.1 mRNA downstream 16212 32021741 ~ 32032975 (-) False LOC110517556
XM_036979914.1 mRNA downstream 16602 32021741 ~ 32032585 (-) False LOC110517556
XM_036979915.1 mRNA downstream 17106 32021741 ~ 32032081 (-) False LOC110517556
XM_021604983.2 mRNA upstream 2276 32074123 ~ 32080766 (-) True LOC110525023
XM_021606199.2 mRNA upstream 188499 32260346 ~ 32274134 (-) False slc14a2
XM_021606200.2 mRNA upstream 188499 32260346 ~ 32274147 (-) True slc14a2
XM_036979922.1 mRNA upstream 248648 32320495 ~ 32378525 (-) False setbp1
XR_005052065.1 mRNA upstream 248648 32320495 ~ 32378525 (-) False setbp1
TU564492 other downstream 156538 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 377260 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 387569 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 1473614 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 1499737 30545402 ~ 30549450 (-) True G495554
TU565305 other upstream 608195 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1255660 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 1260803 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 1968512 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 3693519 35765366 ~ 35767929 (-) True G501142

Expression Profile