RNA id: XR_005052065.1


Basic Information

Item Value
RNA id XR_005052065.1
length 10204
RNA type mRNA
GC content 0.51
exon number 7
gene id setbp1
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32320495 ~ 32378525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACCGAACCTGACACACACGGAGCTAGATCGAGCGAGCGAACAGAACACCCCCCACTCCCCCCCAATTCCGACCCACCGGGAAGGGAAAACACCAGTCTTCTGATAACCAACACCTTCTCCCACTTTTACGCATCCAACCACGATCTCTCCAGTGACGTTACCGTTGAATGTGGGGTTTGAGGCTATTCGGATACAATCTGTGTTCTGCTGGTTTGTGTTCAATGCAGTAAAACGGTTTGCTCCGATCCTCCCCCGGAGTCAAGGATTGAGAGGGAAGCAGCGCTTAACTCGCGGACTGACCAGCCACGGACATGGCGATGGGATCTCTGCAGTGGCCCTGTAAATCTTGTGCTTAGTAAACCCGTAAGCAAGGTTTTTTACGCGCTATATTTCACAGGAAAGGGACGTTGATTCAATCACAACCTTGGATTTTTGTGAACATTGATTTGATTATCAGATCGGCTATAATTATTTTTGCCTTTTTTTCAGCGCACTGTTGACGccattttcctcaggttttctgTATAAAAAAACTTGCTCCATTTGACAGCTACCAAGGACGCTGTCAGCGCAGACGCCGGTTCTGTAAATGTGACCAAATGGATTTTAAATGATCTTGATGACTAATTTACACAATAGTCTCAAGTGTTCGACAACATTGGACATGGtttggCTCTGTTGGATAACCTGTGTTCCTGTGGGACAACCAATCCAGACGCAGTAGCTACCGTTCCCAAGGCAACCCAGTCTGACGGACAGCCACTCTCTGCAAACCTATTGGCTGGCTGCTGCGGCTCTCTGGATCCTGACTGGTTCTGGCGGGAGCGTGGATGGAGCCGAGGGATCTGGTTGGCTCAGCCCGACCCAAAGAGGCGGAGTTAGGAGGCGGAAGGGCTGAACCTGAAGAGGAAGAACAGGAAAGAGCGGGGCTGGGGCCAGCGTCGCGGGGTGATGAGGTCATTGGCGATGTGATGGGCGAGCGCTGGGGGTCccagggggaaggggaggggctAGAGGAACAGGAGTTCTCCATTAAAGAAGCCAGCTTCCAGGAGGGGAGTCTGAAGCTGAAGATCCAGACCACCAAACGCATCAAGAAGCCCCCCAAGAGTCTGGAGAACTACATCTGTCCCCCGGAGATCCGGATGACCATCAGACCCCCCTCAGGGGAGGGCCGAGGGGGCCGACTGGGGGGCCGCGCAGCACAGGACAAGGGACCCCCTAGGAAGAGGACCTATGAGAGACCCTTCAAAGCAGCAGAACCTAGAGAGGGGGGGCTACTGCAACTACTGGGGGATGTCACCCCCCCAAAACACCAGCCCAAGCCCTCTATCCTACACACCACACCACTgcccccccacacactcacataccaaccccaacagcaacacacacagccaccaaAGTTcacacaccaacatacacacaGTCCATCCTGGGCCACGCCTCCCTCCGCACCTCCAGCCAATCCAGTGCATGCGGAGCCTAGCAGAGAACCAGCGGGAGCCAATAGGAGCCCTCTCTCTGACCTGGCCCCTTCCTTCCTCAAACCTCCAATGAAGAGAGTACCAGGAAGCCCCTCCCCTCGCTCTTACAGCCCATCCCCCCATCGACACCTGAGCCCTGATCCCGTGTTGCCCGTAGTAACGGACGCTAGCATTCTAAACCTGACCTCTCTCTCCAGAGGGCGGGGCTTACAGGAGGTCAGTGAGCAGCTGTTTGGAAACATCAAGAGGAAGTACGGCAGGAAGGACCCCCAGAGGACTCAGGGTAATACCCACAATGCAGAGCTGCCATGGGGAAGGAGGGCAGAGAAAGATGCAGAGAGTCCAATAGTTCCAGATGAAAGGCAGAAGTTCAGGAGGGAGGAGACCCCTGagctggagagagaagagaaggagcgGGAGAGCATaggaaggacaggagaggaggaggagagggagatgccAACGCTTGGTGCTCCTGTGCTGATGGAGGAGggaaaagggaggaagaggaggaggaggcggtcTCTCCAGGAGTCACTCACCCAGGAGGACCAATCGGAGCAGCTGCAGGGCACTGACATCACAGAGAGGAATGAATCAGGGCCTCCGGAGCCCAAAGTGTCCCACAAAATGAAAGGCCACAAGATGGAATCATACAAGAGTGAGTCTAGGTCAGGTCGGGGTGAGGAGGGTAGCCAGCCAGAGGCAgacggagacagaggagagaatggggagagagcagacagagcagagaaaggagagagaggagagaagggagagaaaggagcGAGAGGAGACAAAGGAGAGAAggcggggagaggagagagggggatgagtgggGCCGACATGGAATCAGCCATGATCCAGAGCTGGGTGAGGAAAAACCCAGTTGGCCGTCCTAGATCATCCACAGACCCCCACAAacaccctgaccctaaccctagccccagaTTGCcaagccctaaccttaaccatatcCATAGTCCAAGATCcagtctcaaccctaaccctacactgCCCAACCTAAGCCCCGGCCTTAACCCTATCCCCAACACCAGCCCAAAACTCAGCCCTTACCCCAGACCCCCTAAGACCAAGGACCGGTGGTCCTACCTCAAGTCCCGAAGCCCCCCAGGCCTGATCCAGAGGGAGAGTGGCCGCAGCCCCCTGTCAACCATGTCTGAGCCCCCCTCTGCCTTCCCCATCACCCCCTCCAGCCCCCTGTACACCAACACAGATAGTCTGACTGTCCACACCCCCGCCAAGCGCAAACGAGGTCGTCCCAAAAAACAACCCCTGCTCACTGTGGAAACCATCCATGAAGGCACTTCCACCTCCCCCCTGAGCCCTCTGGCCCGGGAGAACCCCGCGGGGCTCAGCCGCAGGAGGAAGACTCACACGCTAACCACGCTAGCCCAAATCACATCGGGTTCCATTAGCCCCAATGCTAATGGGTTGAAACTGCAGCGCAGTGAGGGTGGCCATGTCAGGTCGGTGAAGAAGCTGAAGCTGGGGAAGGTGCAGAGTATCCTGAATGAGATCCTATCAGGCTCCGGCCAACATGGCAGCCTGGCACTGAAGTCAGCCTCAGCTCCTGTCTCTTCCACCATGACGGCCATGGCCTCTACCATTGAGGCGCATCTGGGGAAACAAATCAACGTCAGTAAGAGAGGAACCATCTATAtcgggaaaaagagagggaggaagccaCGCTCCAACACCCAAACCCTTCCCCACAGGGGCGGGGCCAAGCCTCCTTTGCCTGTCCCCATGTCCAGCCTGTACAACAGCCTTCTAGTgccttccaccctccctcccagctCCACTACCCTCCTCCTCAGACCCAGTCacaccctgtcctctctgtgccTCCCTGGCCCTCGCGGCCCCTACTCTGACTCCACCATGCCCAGCCTGCAGCCCATCAGTGCCCTGCCCTCTAAACCCCTAGGCAGGGGGCTACTGGGAGCCGGCTGGAAGCTGTCTCCCCCGCTCCTCCTGGCCAACTCCCCGTCCCACCTATCTGAGGGGGCAGCATCGGTCAAGGAGGTGACGCTGTCACCCATCAGCGAATCACACAGCGAGGAGACCATTCCCAGCGACAGCGGCATAGGGAcagacaacaacagcacctcTGACCAAACAGAGAAGGGAACCAACGCACGACGCAGATACTCATTTGACCTGTCTGGGTTTGAGGCTGCGGAGGCTGCAGCTCTGGAGGCCTCCAGTCGCGGCAGTAGGGGTCGCTGCGTGCGGCAGGCGGCAGTGGTGGACAACTTCATGTCCCAGCAAGAGAAGAAGCAGAAACACCGCAGGAAGAGGAAGTGCCTGCAGAGCCGCGACCACCTGCACTTCCTGTCTGAGCTAGAAGAGgTTGTGGTGAAGCTACAGCAGCTACATGTGTCTCACCGACGCTACGCCTCCTGctaccctcagcacccctaccccTCCATCTTCCGCCTCAActtccaccaccactactaccccctGACCTACGACCCCTACCCCTGTGACCCCGCCCCTTACTTGCGCAGGACCGCCGAGCTCAAGGCCAAGAGGAGGCGCGGCCGGCCCGCCAAAGCCAGTGAGCCAATCACGTCCAAGCTGCCTTTTGTCCAGGGGTTTGGGTATCCACTGGCAGGGGGGAACTACTATGCACCGTATGCCATGCCTTACGCCCcgcctctgagcctgggctactACCCCCCAGCACCCTCCCTCTACCTGCCCCACCATTCCCATAGCCCTTCACCACCCTCCCACTTCATGAGGCCTGCTGTCCCCCCTCCTAAGTTCCACTCTGGAGGCCACTCCAAGCTCCAGGCCGGGGCCAAGCTACGGACGTCTAGCGGCCCACTGCAGGCTTCCTCTGGTCGGGGAGAAGGACTGGGATCCctgggtggtgatggtggagggGTGAGGCTCCACAAgaggaaacacaagcacaaacacaagcacaagGAAGagacccctctcctctcacctcatgACAGACAGGAGCTGGGCGGGCTCTTCAGCGGTGCCAAGACTAATGGGCTGCTCAACCTGTTGACTGACAGGCGGGAGATGAACAATCCGAAGCATCAggagcagcaaagggggggtGGGCGAGGCTCTAGAGGGGGGTCCCGAGGAGCGATGTTTGAGTCggaccctctctcttctctctccatggACCATGTCCAGTTCCGCCCACGCATGCCCGGACAGCCAATGAGCAGCTTCCTGAGCAGCTACAGGAGCCAATCACAGTGGCCAgagctgacctctgacctttttAGATTGCGGGAGGAGGGCAGTGGGCGTGGCAGAAGAAGGGGCTTAGCAGTGTTCGGAGAGGAAGGGGTGATGTCATTCCACAATGCCAGGAAAGAGAAGAGCCAAGAAACAGAAGAGCCGTTCCACAATGCCAGCCCCACTCTAACAGgtaagAGGAGGTATAAGCGTCATGAGGTGGAACAGATCCACGGTGAGGTCAGGAGGATGTGTTCTCTCAACAACGTGCTCAACAGTCAGAGGAGTTTTGAGCACGTGCAGAAGATCCTGCGTGTGAAGCGTCTCCAGCGCCAGGCCAAGACTGGCAACAACGTCGTCAAGAGGCGACCTGGTCGCCCCCGGAAACACCCTATTGATGATTCTGAACCCACCAGTTATGGGAGGGACGAAGGGAGGGGCTTCGGGATGCCGgtgttggagaggtgtgtggaccTACCGGGTAGGCGGAGCTTAAGACCAAGTCCCATCCCCCAGCCTCTGGAGTTTTCCAATCACGACTCTATCTCAGTGGCCATTGAGACGGTGGTGCACCGAGCACGCTCTCTGGCGCCCCCACCGGCCAGAGGAAGGAAACGTAGGGGGAggtgcaggagagaggagggaggggatatgGCCTTCCACTAGCCAATCAGACAGCATCACAGTTGCAGATAGATAGATTAGCTCTGGGCTATCAGAGAGCTGGTGAGAGGAGCCAACACTGGCCAAATGCTGCATTCAAAACCAAGTGGGAAGGTAGTATTTACCACATACGACTGGAAAAATCCACGGGAACGCctctccaactggtaattactagtgggaaacgcAACTATCGTTGCACCTAATAAGGAAATGACCTCGATAACACCATTTTCAGCAaataaatgcaacaacaaaacattctTTTTAAAAAGCTATGGTTTTTTAACACCataatttgtttacaagcatgatagcggtacttttagtttatggttaacgaagcttgttggccattagccaatcagcgtttctcaacgagttcaaagcatgtgaatgcatccaactggtaaTCACCCCTTTACAACTGGGTAATTACCACCTACCCACTTGGTGATAAACACAGCAATAGCAGCCAAACAGACAGCAATGCTGGGACCACCTCTGTGCACTTTGACCTAATGGCTTGTCTGTTTTTCTTCTATGATTGGATATAAGGAGAGTGACTGCAGTAGGTCTCTATGAAGGAACATTAGGAGAGGAGTAGTGTTTAACTCTGAACGAGTTAAGAGGGGAGGAGTGTTGCACTCTGAATGAGAGTGCCACTGAGGACGAACATTCTCTTATCATATATGTATGTGATATAATGATGCGTACCGTCCTATAATATGATACTATGTATGGTACTTTATGCTACAATATCTGATACTATACGGCACTCTTTGATAAGATGCTGTATGATACTATGGTACTATACAGTATGAGATACTATGGTACTTTATAATACTCTTTATCTGAATGTGGCATTAGCCACGTCTCTACCAGCAGACTGGGGGGTGGTGATTGGATAATATGATACTGTGCAGCTCTGATCATTTTTTTGCCTTCTCTAATGAAGCTAGTTAATGACCACCTACCTACCTTACCCCACTCACCCTTCTATCCCTCACCTCTCATACCCACAGGATCTAAGACCAGTAACTCACCCTACCCACTAGCCCCTTCTACACCCTGTCTACTCCCCCTGCCCTGTCCTGGGCATGGATACTATAAAGGCAATATGTTGGACTGAGCTTCCCTGGCTGTAGGTCTCTACAGCTGTGGTCTAACTGTACATAGGAGCATACTCCACTTTCACCCGCTTTTTACCACGGGGAGAACAGCCTATCTACATGTACTGGCTTATATCAAATAGAAGTGTTGTACAATAGACCATAAACGTCGGGATTGTTGTTTTATTACCAAAAATAGACCTGGATGGGACTCAAGACCTGTTTGTTTTCAGACTGAAGGAACCACATTCATTTATTTTGTGTATGAGAAGGCCATCACACACATGGGAATATCAGGCGTGTTTGACGAAACCTTGGTTTTAATGCACTATATAAACATACGCTTACATTTAATCAAAAGTCAGCACTTACATGCTTGTTCTAGCCTTACGTTTTGGCCTTGACTTCAATGGTGAATATCCATTCAGAAACATGTGCATTCATTTAATCAATTTGAATATGCAGGACGCTCAGCCAATGGTGTCAAACCTAAGCCCAAGTCTGAGATTTGATTGGACAGTGAAGCTGGAGGAGGGTTAATGATCAGTGTTTTGTAGTGAGTGTGTGGTACTCTAAAGATTCTGTCTgagtagtggttgaaaaacaacatAACACAAAATGTAAAGATTGGAATAGGAAAACCAAAGTCTCAGAGATATGTGTGTTTCACAGACTTGTCAGGTGTGGGGTTGTCAGCATTCTCAATCTGCAGTTAAACACACCAGCTAGCTATCATGTCTTCAGTATTTCAGAAAATACCAGTGGGTCAGTATTTCATTGGGGacctgtaaatgtaatgtaaacTTGGgaagcctctcctctctctgtgaggGTCTTGTCAGCTCCAGCAGTTCTGCACGTGCCTTATGTTTGTTTCTTAAACCATCACATCTCATTTTGGGGGAATTCAAAATGGTGGAGAAGTTACTGCGATTGAAACCACGTACTTATGATTGTGCATTTACGACACGTGTGTCTTAGCAACCACAACGCGGGCACTACCTGTGTCCCTTTGCAGCCATACGTACAACAGGCCTGATTCCATTTCAGTTGCAAGCCCCTTGTGCTCACCCTGGCTCTTTGGAGTGAACAGATGTTAAAAGGCTCGTTTAAGCTCTATGGGAACGAAAAATGGATCCATCACGTACACTATTACACACATCCAGTCCTTTCATATCTGAGCGCTGTGAGCAACGGAGGTGGTAAGAGCCAGGGAAAGGGGCCCTGAACTTAAATGGAACCAGGCCCCAGGCGGTGGACAGGCTGTGCCAGGGGAGTTGTATTGGGAACCATGCTGTCTTACGTAGTTGTTTGCTATGCATCAGGTCTGGCCTGGGCTGTCTGAGGGAATCCACCCTTCCACAAAGACAAATAAGTGTCTTATTTACCCAATAAAACATGAAGTCATTTAACCAGAAGTGtgaataataacagtaataatttGTAAAGCGTTGTGCAGAAAGTGACTATCATTTCATGTCAACTTTAGTGACTGCAGCTCCCTGCAGTGCTGCCTTAATCAGAAGTCAAGCTCCAGTACTGAAGTGTTTGTCTGTTGTAAATAGtgtctgttctgttgtgttctgttgtgttctgccTGCATGGATACAAACTGGGCTCAGTTACGTACGCTGGTAtagcctaaacctaaacctatcgTAGACCCCAGACCTATCGTAGACCCCAGACCTATCGTAGACCACAGACCTATCATAGACCACAGACCTATCGTAGACCACAGACCTATCTTAGACCACATTTGACATTAGAGCCAGCAAGACCCCATAAGTCAGTCCCTATCCATCCATCAATTAGAATGTTCGTCAAACAATCATCGCAAGGTTGAGATCCCAGGGCCTGTGCCAGCCTATGATAGTGTCTCTCATTGCACTTCAGCTAAGACCAAGAACCCTCATTGGCTAGCAGCTATACTCCCCTGAGCCAATGGGTGCCTAGTGcagcagtgtgtgcgtgtgtgtgggacTTGCTCAGAGGGCATTACCAAAAATACACCTGtccttgtcagtgtgtgtgtcagctcaCACACTGCGCAGAGACTGAGCCTGAACTGGATCTCATAACCAAATTACACCTTTCACAGGAGGCCTGGATCTCTCTAAACCTTTCTAGGGTCTGAGTGTGGTCTAGATGTAGTCTAGGATTGGTCTAAGGAATCTAGATGTAGTCTAGGATTGGTCTAAGGAATCTAGATGTAGTCTAGGATTGGTCTAAGGAATCTAGATGTAGTCTAGGATTGGTCTAAGGAATCTAGATGTAGTCTAGGTTGGTCTAAGGAATCTAGATATATTCTAGGTTGGTCTAAGGAATCTAGATGTAGTCTAGGTTTGGTCTACGGAATCTAGATGTAGTCTAGGATTGGTCTAAGGAATCTAGATGTAGTCTAGGATTGGTCTAATGAATCTAGATGTGGTTTAAGGGGTCTATAGGCTTGGCAGCTCAATATTCCATGGTCGGTCTCTGATGTTTGAGTTAAAGCCACTAggatctgtctgtttctctctctaccagccGATGTTCCGGTGCCTTCTACAGCTGACTAGTATTGTCCCGATCCTCTGCTTTAACGCTACACAAGACCCATCGCGTGGTCCAGTACAGTCCCGTACGGTCAAGTTGGGTTTTGCGGTCTTTTGTTATGTACTGGGTTCTGTATTCACTCTGGTCCAACTGTATGACTGGTATGACTCCAGGTAGAAGTTTACCCAACCCTAAATCCTAATCTTCATCATCAGGGGGAAGAAGGAACATCTGGTCCTGGATCAGTGGTTAGGGAAGACCTCTGCCTCTACACTGAGACCAGTCTGACCAGTCCAGGACAGCCACTGGAGCTGAATCATACTGCATGCGCCTCAAATCACagcctacatagtgtactaccaCAGAACCTGTTCCAACGCAGTGCGCTGGTATGGAGTCATTTGAGAAGCAGCCACAGTCTCTACTATAATATGTGTAGTCATTAACATATGTGTTATGTTTCCAAGCTTTAATGTTGTTCAACGCTGAACACGCAGACGAAGCGTCGATGAGGAAACCAATAAATGTACTTTGCAAGAGCACAAAGTGAGCTCTTAACTGTGTTGGCATATTTGAGTTGGAATACATAGTGTATTTGAACCTTTTTACTAGAGTGGGTTTAACTTTATTTGCATGCTCCACTTGATTGTATGCATTACGATTTTAGACGAGCGGAGAAGTTGACTTTCAGTTGCATTTGGAGCAAGACTTGTACATTGTTTGATATGTTTGTTTTTGTAATGGATTTTTAATTCATAAAGCATTTTTGTACATTGTATGAATATTAAAAATGGCAAATATTTGACATGTAGACATAAGTAAATACTTAGATGCTCATGCATATGCATATATCCTTCTTAGTATGTATGTGTAAATGTACACATATTTTGTATTTGCCTTCACTCATATACAGATATATGTCATATGCACATATACatgcaatatactgtatatgtatagcCATGTCTGCTGGCATGCTTCTGGTCATGTTTACTTAACATGATCTTGTCgtctttattttcattttttttctcttttctctgAGGAAAAGCTCGTTCTTTTGCTACCGTTTTCCTGGCTGGCCGCATTGGGCACTTATTAAGATGAAATTGAACTTGTTCATGTTATTCATTGTGTGAAATAATAAATGAGTTTATTGAAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564720 lncRNA downstream 32691 32287511 ~ 32287804 (-) True G497050
TU564702 lncRNA downstream 69982 32246193 ~ 32250513 (-) True G497032
TU564689 lncRNA downstream 92102 32227029 ~ 32228393 (-) True G497021
TU564681 lncRNA downstream 117120 32201806 ~ 32203375 (-) True G497013
TU564658 lncRNA downstream 131388 32155680 ~ 32189107 (-) True G496993
TU564783 lncRNA upstream 9691 32388216 ~ 32388472 (-) True G497112
TU564787 lncRNA upstream 11015 32389540 ~ 32389761 (-) True G497116
TU565135 lncRNA upstream 32065 32410590 ~ 32410895 (-) True G497427
TU565136 lncRNA upstream 32412 32410937 ~ 32411181 (-) True G497428
TU565121 lncRNA upstream 130162 32508687 ~ 32516502 (-) True LOC110526888
XM_021606200.2 mRNA downstream 46348 32260346 ~ 32274147 (-) True slc14a2
XM_021606199.2 mRNA downstream 46361 32260346 ~ 32274134 (-) False slc14a2
XM_021604983.2 mRNA downstream 239729 32074123 ~ 32080766 (-) True LOC110525023
XM_036979909.1 mRNA downstream 248648 32049187 ~ 32071847 (-) False epg5
XM_021606203.2 mRNA upstream 90787 32469312 ~ 32482950 (-) True thbs4a
XM_036979929.1 mRNA upstream 130155 32508680 ~ 32520900 (-) False LOC110526888
XM_021606209.2 mRNA upstream 301512 32680037 ~ 32682898 (-) False LOC110525784
XM_021606208.2 mRNA upstream 301512 32680037 ~ 32682899 (-) False LOC110525784
XM_036979932.1 mRNA upstream 312182 32690707 ~ 32713153 (-) False LOC110525785
TU564492 other downstream 427846 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 648568 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 658877 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 1744922 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 1771045 30545402 ~ 30549450 (-) True G495554
TU565305 other upstream 301517 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 948982 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 954125 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 1661834 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 3386841 35765366 ~ 35767929 (-) True G501142

Expression Profile