RNA id: XM_021606209.2


Basic Information

Item Value
RNA id XM_021606209.2
length 871
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110525784
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32680037 ~ 32682899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCACGAATCACGTGACCAGATAATTATTCAGCAACCCCCCGCCCCCTTCAGCAATCTCTAGGCTGACTGAAAGATAGATATGAAGGTTATATGCCTTTGCTAGCTGCGTTTGGTTCACCATTGTCTATAGTGCTTATTTTAACATGTAAAACGAGGTTCATTTTCAATGGGCACTGAATAGCTCAAATTGGTTGATGGAATTTGTCTGCTACCAGCATTTTGTCCGATTGCTATTCTTAGAAATCAACTCTGCAAACAAACGTCATGGTTTGACAGTATGGCCTGGGAAACTGACCTGAACGTTTATTTTGTTTTCGAATAATATAACCTACTTTCAGCTGACAACATCAAGCCGAAGGAACTGAGGATTGTTTTCACCCGGAAGAAGACCCGCGAGGACATGGGTGGCAAAGTCAGTAGCACAATGGCTGCAGTTGGACGGGTGGTACAGGCTGTGAAACCTCATGCTCCGCTAATGAAGTTTCCCAGCAGAGAGGGGGTCCCCAGGCTGAGTGTCCAAGAGACTCTTAAAACATTAGCAGTCGGCTCTCCAAGTTCACCTCCAGTTGTAGCACCGCCGCTGTTATCGAGACCCCCCAGACCTGTCACTCTACTCTCTGGAACCCCAGACAGTGTGGCCACAGTGAAGGAACTCCCCCAGAGATACCGCAGGAGGGCATTGGAAACAGACGAGATGGACTATATTCAGCGTGGTGGACCAGAGTGATAAGTCCTTACCTGTGGAAATCAGTTTGTGTTTTTGCCTAATTTTGTTCCCCAACAAGAGAGGACCTGCTGCCACACCTCAGACACagaataatactataataactgAAACTGTACAAATAAAGTATATTTTTAAAGATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU565297 lncRNA downstream 16784 32658242 ~ 32663253 (-) True G497573
TU565239 lncRNA downstream 67519 32588068 ~ 32612518 (-) True G497518
TU565121 lncRNA downstream 163535 32508687 ~ 32516502 (-) True LOC110526888
TU565136 lncRNA downstream 268856 32410937 ~ 32411181 (-) True G497428
TU565135 lncRNA downstream 269142 32410590 ~ 32410895 (-) True G497427
TU565409 lncRNA upstream 142959 32825857 ~ 32826944 (-) False G497663
TU565411 lncRNA upstream 142959 32825857 ~ 32826944 (-) True G497663
TU565450 lncRNA upstream 244411 32927309 ~ 32927532 (-) True G497698
TU565451 lncRNA upstream 244695 32927593 ~ 32930771 (-) True G497699
TU565463 lncRNA upstream 254986 32937884 ~ 32938314 (-) True G497704
XM_036979929.1 mRNA downstream 159137 32508680 ~ 32520900 (-) False LOC110526888
XM_021606203.2 mRNA downstream 197087 32469312 ~ 32482950 (-) True thbs4a
XM_036979922.1 mRNA downstream 301512 32320495 ~ 32378525 (-) False setbp1
XR_005052065.1 mRNA downstream 301512 32320495 ~ 32378525 (-) False setbp1
XM_021606200.2 mRNA downstream 405890 32260346 ~ 32274147 (-) True slc14a2
XM_036979932.1 mRNA upstream 7809 32690707 ~ 32713153 (-) False LOC110525785
XM_021606214.2 mRNA upstream 7809 32690707 ~ 32730675 (-) False LOC110525785
XM_021606212.2 mRNA upstream 7809 32690707 ~ 32730676 (-) False LOC110525785
XM_036979931.1 mRNA upstream 7809 32690707 ~ 32730676 (-) True LOC110525785
XM_021606215.2 mRNA upstream 67767 32750665 ~ 32759951 (-) False LOC110525787
TU564492 other downstream 787388 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 1008110 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 1018419 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 2104464 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 2130587 30545402 ~ 30549450 (-) True G495554
TU566350 other upstream 644609 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 649752 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 1357461 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 3082468 35765366 ~ 35767929 (-) True G501142
TU570258 other upstream 3825158 36508056 ~ 36517268 (-) True hk2

Expression Profile