RNA id: XM_021606203.2


Basic Information

Item Value
RNA id XM_021606203.2
length 3738
RNA type mRNA
GC content 0.53
exon number 22
gene id thbs4a
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32469312 ~ 32482950 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAATGCAGGAACACACCCCTCTACTTTAAAGTCTGGCCCCTTTAAAAAAGCCCGTCTGTAGCCACAGGAGAATCTCCCCACTGCTACTGGGACTCTGCTTTCAACATCTGTCTGTCAGTTTGTCAGTCTGTCTATCAATCAGTCAGCACCAGGGGTATTCTAAATAGATAGCTGCTGTATTGATCCCTGTCTGTAGGACCAGGTGTACTGTGGACTAGTCGTGACGGTGACCCAGCCTGGGCTCTCAGGACTGGTTTGTGCTGAAGGCTGAAGACTAGGAAGTGTGAGGAtgggggtgtggatcagaaaagtGGTCCTCTCTCTGCTGATGCTACAACTGGCCACGACTGTCACAGCACAAGGCATTGTGTACGACCTGCTGGTGTCTCCAGACTGCCTGCCTGACCTGACGCAGGGAGGGCTGAAGAATAAAGGTCTGGATGaggccttcctcctctcctccttcaggctccATAGCAAGtccccctctcatctctacaGCATCATCAACCCCAGGGACAACAGCAAGTACCTGGAGTTCACCCTGCAGGCCAAACTCAACAAGGTGACGATCCGTTACCAGAAGACTGATGGTAGGGCTGGCACCACCAGTTTTAGCCACCCCTCTCTGGCGGACGGCAAGGAGCATCATGTGATGATCCATGCCAGCGGTCTGCAGAGAGGACCAGGTCGTATGGCGGTCTACGTAGACTGTAGACTGGCTCACACTGTGGACGAGCTGCCTGCTGCCTTCGGGTCGCTGACACCTGGACACAACAAGGTGGCGCTTAGGACCCTGCAGCCCACCGGGCAGGATGAGTTGACGGACCTGAAACTGGTGATAGAGGACACGTTAGATAACGTCGCTACGCTCCAGGACTGCAGCATACAGCAGAGCGAGTCTCTGGGTACTATTCAGCTACTGGGCCTCCAGGCAGGCGGACAGGATCCGTCTCAGATGTTAGAGCTCCACAAGATGATGTCAGAGATGAAGAACCTGCTCCTCCAGCAGATTAAGGAGACCACATTCCTCAGAAACACCATCTCAGAGTGTCTGGCATGTGgtctggGTGGCAACATGGCGTCAGGCCCAGGTACAGGTCCACGGTCAGGCCCGTCCAAGTGTAGTCCAGGTATGTGTTTCAATCAGGACATGTGTATCCCGGCCGAGGGAGGACGCTTCACCTGCGCCCCCTGCCCCGACGGATACACTGGAGACGGAGTTCACTGTGATGACGTGAACGAGtgccAGTTTAACCCCTGCTTCCCCGGTGTGAGGTGTGTGAACACAGCTCCTGGGTTCCGCTGTGAGAGATGCCCTCTGGGATACACTGGTCTTGAGATCAACGGAGTGGGAGTGTCCTACGCACAGTCCCACAAACAGGTGTGTGATGACATAGATGAATGCCAGGGTCCTCCTGACAACGGAGGCTGCACCGCCAACTCTCACTGCCACAACACCAGGGGTTCATTCCGTTGTGGGGAGTGTAAGAGTGGCTTCTCTGGGGACCAGGTGAGCGGCTGCAGTGGTGGGAGGCTCTGTGGGAATGGCCAGCCCAACCCCTGTGACAGCAATGCACAGTGTGTAGTGGAGAGAGACGGGAGTGTTAGCTGCgagTGTGACATAGGGTGGGCAGGTAATGGCTATGTGTGTGGGAAGGACACAGACATCGATGCTTACCCAGACGACAAGCTAAGGTGCAGGGACAACAACTGTAAGAAGGACAACTGTATGTTTGTTCCTAACTCTGGCCAAGAGGACGCAGACAGGGACGGGCTCGGGGACGCCTGTGATGATGACGCTGATAGCGACGGCATCGTTAACATAGAGGATAACTGTTGGCTGCATCCTAACGTGAACCAGAAGAACAGCGATAAGGATCTCCATGGCGACGCGTGTGACAACTGCTTGACGACGGAGAACCCTGATCAACGAGACACGGACAAGGACGGGCTAGGCGATGACTGTGACGATGACATGGatggagacgGCCTGAAGAACATTCTGGATAACTGCCAGCGTGTGGCCAACCTagaccagagggacagagacaacgATGGGGTGGGAGACGCCTGTGACAGCTGTCCTGACATGGTCAACCCCAACCAGTCAGATGTTGATGATGATCTTGTAGGAGACACATGTGACACCAACATAGACAGTGATGGGGACGGTCACCAGAACACTAAGGACAACTGTCCTACAGTCATCAACTCCTCCCAGCTGGACACAGATAAGGACGGACAGGGAGACGAGTGTGACGATGACGATGACAACGACGGTATCCTGGACCAAGCAGACAACTGCAGACTGGTGGTCAACCCTGACCAGACAGATGAGGACAatgACGGCGTGGGTGATGCGTGTGCAGGGGACTTTGACCAGGACAAGGTGATTGACAGGATAGACAACTGTCCAGAGAATGCTGAGGTCACCCTGACAGACTTCAGAGCCTATCAGACGGTGGTACTGGACCCTGAGGGTGACGCCCAGATTGATCCCAACTGGGTGGTTCTCAACCAGgGTATGGAGATAGTCCAGACTATGAACTCTGACCCTGGCCTCGCTGTAGgcTACACAGCATTCAGTGGGGTGGACTTTGAGGGGACGTTCCACGTGAACACGATGACTGATGATGACTATGCAGGCTTCATCTTCGGCTACCAGGACTCCTCCTCCTTCTACGTGGTCATGTGGAAACAGACTGAGCAGACCTACTGGCAGGCTGTACCCTTCAGAGCTGTGGCTGAGCCTGGCATACAGCTCAAGgcTGTGAAGTCTAAGACAGGTCCAGGGGAGTATCTGAGGAACTCCCTGTGGCATACAGGAGACACCAACGACCAGGTACGCCTGCTGTGGAAGGACAAGAGGAACGTGGGTTGGAAGGACAAGGTGTCCTACCGCtggtatctacagcacagaccaCAGGTTGGATACATCAGGGCGCGTTTCTATGAGGGTCCCAACCTGGTAGCAGACTCTGGGGTGAAGATAGACAACAGTATGCGAGGAGGAAGACTGGGAGTCTTCTGTTTCTCCCAGGAAAACATCATCTGGTCCAACCTCAAGTACCGCTGCAATGACACCATCCCTGAAGATTACCAGGAGTACAGTGCCCAGAACACTGAATAAACACACCGAGcgtggaagaggagagaaggaacagAGAAGAGATATTGGGAGGGGGTGTTAGAGGACAGAAAAATGAGGatgggacagagaagagagggggagaaagagaggaagagggaaaaggaggagagaggagatcgGTGGGGCATTATGAGGAGCAAGGCTTTTAAACGGGCTTTCCACAAGCAATCATCCCTTTTATAAAAGCATTATTATTACTGCTAGACTTTTGCCTGGTATGAAGACTGACTCATCAGGGCAACAGACTTCCAGACATGACTTGTTAATGCTGTGCCTACACacgctatactgtactgtacatgtggaATTGGTTCAACTAAAAGACTGATGTAGATTGTAGTGAACCTGTATATGTCTACTATCTGAGGTGAGGGTTATTGTATctaggggttcaaactgtagttAGGGTCTCTCCTATTTCTGCCATTGGAGGAAAACAAAGACAAGGGAAATAGATGAAGGAGCTGGTGTTGACTGCTCTTACATTAAAACAACCGATGTCCATCATACGTTACATTCAATAGATGTCATTATTTGTTCAGTTAATCTATGAATAAATATTCTGAGCATTTGGTAAAACGC

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU565136 lncRNA downstream 58131 32410937 ~ 32411181 (-) True G497428
TU565135 lncRNA downstream 58417 32410590 ~ 32410895 (-) True G497427
TU564787 lncRNA downstream 79551 32389540 ~ 32389761 (-) True G497116
TU564783 lncRNA downstream 80840 32388216 ~ 32388472 (-) True G497112
TU564703 lncRNA downstream 90939 32366632 ~ 32378373 (-) True setbp1
TU565121 lncRNA upstream 25737 32508687 ~ 32516502 (-) True LOC110526888
TU565239 lncRNA upstream 105118 32588068 ~ 32612518 (-) True G497518
TU565297 lncRNA upstream 175292 32658242 ~ 32663253 (-) True G497573
TU565409 lncRNA upstream 342907 32825857 ~ 32826944 (-) False G497663
TU565411 lncRNA upstream 342907 32825857 ~ 32826944 (-) True G497663
XM_036979922.1 mRNA downstream 90787 32320495 ~ 32378525 (-) False setbp1
XR_005052065.1 mRNA downstream 90787 32320495 ~ 32378525 (-) False setbp1
XM_021606200.2 mRNA downstream 195165 32260346 ~ 32274147 (-) True slc14a2
XM_021606199.2 mRNA downstream 195178 32260346 ~ 32274134 (-) False slc14a2
XM_021604983.2 mRNA downstream 388546 32074123 ~ 32080766 (-) True LOC110525023
XM_036979929.1 mRNA upstream 25730 32508680 ~ 32520900 (-) False LOC110526888
XM_021606209.2 mRNA upstream 197087 32680037 ~ 32682898 (-) False LOC110525784
XM_021606208.2 mRNA upstream 197087 32680037 ~ 32682899 (-) False LOC110525784
XM_036979932.1 mRNA upstream 207757 32690707 ~ 32713153 (-) False LOC110525785
XM_021606214.2 mRNA upstream 207757 32690707 ~ 32730675 (-) False LOC110525785
TU564492 other downstream 576663 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 797385 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 807694 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 1893739 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 1919862 30545402 ~ 30549450 (-) True G495554
TU565305 other upstream 197092 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 844557 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 849700 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 1557409 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 3282416 35765366 ~ 35767929 (-) True G501142

Expression Profile